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These data include potential Yuma Ridgway’s rail (Rallus obsoletus yumanensis) habitat classified from concurrently occurring Landsat images taken during telemetry field studies of and call count surveys for Yuma Ridgway's rail in 2016.
Categories: Data;
Types: Downloadable,
GeoTIFF,
Map Service,
Raster;
Tags: Landsat images,
Listed birds,
Salton Sea,
Sonny Bono Salton Sea National Wildlife Refuge,
Wister Waterfowl Management Area,
Technological advancements in Global Positioning System (GPS) telemetry markers allow almost real-time observation of waterfowl movements and habitat selection. Telemetry data on ducks marked with GPS transmitters can be used to evaluate performance of remote sensing data (for example, dynamic open-water maps produced by Point Blue Conservation Science) for classifying habitats that are flooded and available for waterfowl. Translating dynamic open-water maps to waterfowl-relevant habitat maps provides a major improvement for wildlife researchers and managers to assist in their assessments of the areas and habitats used by waterfowl as hydrologic conditions change, both temporally and spatially. Suitable habitat...
These datasets were developed to represent the genetic diversity, population structure, and geographic distribution of Plantago ovata in the Mojave Desert. This data release consists of two tab-delimited text files representing the genetic diversity and structure of Plantago ovata (.genepop and .vcf), and two raster spatial datasets (GeoTIFF) reflecting predicted habitat for the species within the Mojave Desert. The genetic datasets record genetic variation at an individual level, with the file structures varying based on the programs within which the files are intended to be edited. Each file contains 13,111 SNPs genotyped in 748 individuals. The genepop file can be viewed in GENEPOP software (Rousset 2008) or...
Types: Map Service,
OGC WFS Layer,
OGC WMS Layer,
OGC WMS Service;
Tags: Arizona,
Botany,
California,
Genetics,
Mojave,
We deployed miniature Temperature-Depth Recorders (TDRs; Cefas G5, 3 g, Cefas Technology Ltd., Lowestoft, UK) to measure dive depths and wet/dry condition (depending on TDR model year). TDRs have a saltwater switch that, when immersed, initiates a FastLog mode to record pressure and temperature at high resolution. The FastLog mode can be programmed to record only if the pressure is greater than a user-defined threshold (e.g. dive depth). In addition, some units have a wet/dry setting to record the start and end times of wet periods (bouts of time on the water, regardless of dive behavior). CEFAS G5 TDRs are an archival unit, requiring recapture of the tagged bird to recover the tag and download data. TDRs were...
We deployed miniature Temperature-Depth Recorders (TDRs; Cefas G5, 3 g, Cefas Technology Ltd., Lowestoft, UK) to measure dive depths and wet/dry condition (depending on TDR model year). TDRs have a saltwater switch that, when immersed, initiates a FastLog mode to record pressure and temperature at high resolution. The FastLog mode can be programmed to record only if the pressure is greater than a user-defined threshold (e.g. dive depth). In addition, some units have a wet/dry setting to record the start and end times of wet periods (bouts of time on the water, regardless of dive behavior). CEFAS G5 TDRs are an archival unit, requiring recapture of the tagged bird to recover the tag and download data. TDRs were...
Lidar-derived digital elevation models often contain a vertical bias due to vegetation. In areas with tidal influence the amount of bias can be ecologically significant, for example, by decreasing the expected inundation frequency. We generated a corrected digital elevation mode (DEM) for tidal marsh areas around San Francisco Bay using the Lidar Elevation Adjustment with NDVI (LEAN) technique (Buffington et al. 2016). Survey-grade GPS survey data (6614 points), NAIP-derived Normalized Difference Vegetation Index, and original 1 m lidar DEM from 2010 were used to generate a model of predicted bias across tidal marsh areas. The predicted bias was then subtracted from the original lidar DEM and merged with the NOAA...
Categories: Data;
Types: ArcGIS REST Map Service,
ArcGIS Service Definition,
Downloadable,
GeoTIFF,
Map Service,
Raster;
Tags: Remote Sensing,
San Francisco Bay,
USGS Science Data Catalog (SDC),
biota,
digital elevation models,
We have incorporated the Hawaiian language spellings of place names however, software limitations for metadata files did not allow for inclusion of the appropriate diacritical markings. Among important seabird breeding sites in the main Hawaiian Islands (MHI), Lehua Island off Niʻihau, and Moku Manu Islets off O'ahu support diverse and abundant seabird breeding populations. Both offshore islands provide excellent nesting habitat for surface nesting boobies (Sula spp.) and Moku Manu also supports nesting habitat for relatively large breeding populations of Sooty Tern (Onychoprion fuscatus) and Brown Noddy (Anous stolidus). Additionally, Ulupa'u Crater, near Moku Manu on O'ahu, is one of only a few main island sites...
We evaluated the expected success of habitat recovery in priority areas under 3 different restoration scenarios: passive, planting, and seeding. Passive means no human intervention following a fire disturbance. Under a planting scenario, field technicians methodically plant young sagebrush saplings at the burned site. The seeding scenario involves distributing large amounts of sagebrush seeds throughout the affected area.
Categories: Data;
Types: Downloadable,
GeoTIFF,
Map Service,
Raster;
Tags: biota,
fires,
habitat alteration and disturbance,
human impacts,
native species,
We examined nest survival of Greater Sage-grouse (Centrocercus urophasianus; hereafter, sage-grouse) in relation to fine-scale habitat patterns that influenced nest site selection, using data from nests of telemetered females at 17 sites across 6 years in Nevada and northeastern California, USA. Importantly, sites spanned mesic and xeric average precipitation conditions and concomitant vegetation community structure across cold desert ecosystems of the North American Great Basin. Vegetative cover immediately surrounding sage-grouse nests was important for both nest site selection and nest survival, but responses varied between mesic and xeric sites. For example, while taller perennial grass was selected at xeric...
Categories: Data;
Tags: California,
Ecology,
Nevada,
USGS Science Data Catalog (SDC),
Wildlife Biology,
Preserving native species diversity is fundamental to ecosystem conservation. Selecting appropriate native species for use in restoration is a critical component of project design and may emphasize species attributes such as life history, functional type, pollinator services, and nutritional value for wildlife. Determining which species are likely to establish and persist in a particular environment is a key consideration. Species distribution models (SDMs) characterize relationships between species occurrences and the physical environment (e.g., climate, soil, topographic relief) and provide a mechanism for assessing which species may successfully propagate at a restoration site. In conjunction with information...
Categories: Data;
Types: Downloadable,
GeoTIFF,
Map Service,
Raster;
Tags: Arizona,
California,
Mojave,
Nevada,
Utah,
Preserving native species diversity is fundamental to ecosystem conservation. Selecting appropriate native species for use in restoration is a critical component of project design and may emphasize species attributes such as life history, functional type, pollinator services, and nutritional value for wildlife. Determining which species are likely to establish and persist in a particular environment is a key consideration. Species distribution models (SDMs) characterize relationships between species occurrences and the physical environment (e.g., climate, soil, topographic relief) and provide a mechanism for assessing which species may successfully propagate at a restoration site. In conjunction with information...
Categories: Data;
Types: Downloadable,
GeoTIFF,
Map Service,
Raster;
Tags: Arizona,
California,
Mojave,
Nevada,
Utah,
Escalated wildfire activity within the western U.S. has widespread societal impacts and long-term consequences for the imperiled sagebrush (Artemisia spp.) biome. Shifts from historical fire regimes and the interplay between frequent disturbance and invasive annual grasses may initiate permanent state transitions as wildfire frequency outpaces sagebrush communities’ innate capacity to recover. Therefore, wildfire management is at the core of conservation plans for sagebrush ecosystems, especially critical habitat for species of conservation concern such as the greater sage-grouse (Centrocercus urophasianus; hereafter sage-grouse). Fuel breaks help facilitate wildfire suppression by modifying behavior through fuels...
Elevation projections from the WARMER-Mangroves model for J N. "Ding" Darling National Wildlife Refuge across a range of sea-level rise scenarios (53, 115, and 183 cm by 2100). The model was calibrated using dated soil cores sampled from the basin hydrologic zone. These data support the following publication: Buffington, K.J., Thorne, K.M., Krauss, K.W., Conrad, J.K., Drexler, J.Z., and Zhu, Z., in-review. Vulnerability of Sanibel Island’s mangrove resources to sea-level rise (Florida, USA).
A study comparing reintroduction scenarios for the San Francisco gartersnake (Thamnophis sirtalis tetrataenia), an endangered subspecies native to San Mateo County and Santa Cruz County in northern California. Models for snake survival, growth, fecundity, and reproductive status were used to construct a demographic population model. Data are posterior distributions for demographic parameters from Markov Chain Monte Carlo sampling in hierarchical Bayesian models. These data support the following publication: Rose, J.P., Kim, R., Schoening, E.J., Lien, P.C., and Halstead, B.J., 2023. Comparing reintroduction strategies for the endangered San Francisco gartersnake (Thamnophis sirtalis tetrataenia) using demographic...
Categories: Data;
Tags: California,
San Mateo County,
USGS Science Data Catalog (SDC),
Wildlife Biology,
biota,
Fragmentation and loss of natural habitat have important consequences for wild populations and can negatively affect long-term viability and resilience to environmental change. Salt marsh obligate species, such as those that occupy the San Francisco Bay Estuary in western North America, occupy already impaired habitats as result of human development and modifications and are highly susceptible to increased habitat loss and fragmentation due to global climate change. We examined the genetic variation of the California Ridgway’s rail ( Rallus obsoletus obsoletus), a state and federally endangered species that occurs within the fragmented salt marsh of the San Francisco Bay Estuary. We genotyped 107 rails across 11...
Categories: Data;
Types: Citation,
Map Service,
OGC WFS Layer,
OGC WMS Layer,
OGC WMS Service;
Tags: Clapper Rail,
Fragmentation,
Microsatellites,
Population declines,
Ridgway’s rail,
Greater sage-grouse (Centrocercus urophasianus; hereinafter sage-grouse) is a sagebrush obligate species and widely considered an indicator species for sagebrush ecosystems and other sagebrush-dependent species (Hanser and Knick, 2011; Prochazka and others, 2023). Sagebrush ecosystems are threatened by a wide range of disturbances and anthropogenic factors, including climate change, severe drought, altered wildfire regimes, expansion of invasive species, and anthropogenic development. Collectively, these threats have led to reduced ecological integrity and sage-grouse habitat quality within the sagebrush biome (Doherty and others, 2022). Steady and long-term declines in sage-grouse populations have led to large-scale...
This data table contains summary data for temperature time series in near-surface sediments in high and low tidal marsh at 7 sites during 2015. These data support the following publication: Janousek, C.N., Buffington, K.J., Guntenspergen, G.R. et al. Ecosystems (2017). doi:10.1007/s10021-017-0111-6. http://link.springer.com/article/10.1007/s10021-017-0111-6
Categories: Data;
Types: Citation;
Tags: Deschampsia cespitosa,
Distichlis spicata,
Pacific coast,
Salicornia pacifica,
carbon cycling,
This table contains data on dry mass remaining in a subset of Salicornia pacifica and Deschampsia cespitosa litter bags removed over a series of time points spanning 6 months. These data support the following publication: Janousek, C.N., Buffington, K.J., Guntenspergen, G.R. et al. Ecosystems (2017). doi:10.1007/s10021-017-0111-6. http://link.springer.com/article/10.1007/s10021-017-0111-6
Categories: Data;
Types: Citation;
Tags: Deschampsia cespitosa,
Distichlis spicata,
Pacific coast,
Salicornia pacifica,
carbon cycling,
This shapefile represents habitat suitability categories (High, Moderate, Low, and Non-Habitat) derived from a composite, continuous surface of sage-grouse habitat suitability index (HSI) values for northeastern California during the winter season (November to March), and is a surrogate for habitat conditions during periods of cold and snow.
Categories: Data;
Types: Downloadable,
Map Service,
OGC WFS Layer,
OGC WMS Layer,
Shapefile;
Tags: California,
Great Basin,
Greater sage-grouse,
Habitat,
Nevada,
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