Filters: partyWithName: Ecosystems (X) > partyWithName: Western Ecological Research Center (X) > Types: OGC WMS Layer (X)
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The Shasta salamander (Hydromantes shastae) has been petitioned for listing under the Endangered Species Act. The greatest threat to the species is likely habitat loss that will be caused by the increase in elevation of Shasta Lake that will occur with proposed increases in the height of Shasta Dam to increase water storage capacity and maintain cold water for Chinook salmon (Oncorhynchus tshawytscha). Another potential threat is the fungus Batrachochytrium salamandrivorans, which has not yet been detected in North America but is lethal to related salamanders (Hydromantes strinatii) in Europe (Martel et al. 2014). In addition to these threats, recent genetic evidence suggests that the species as originally petitioned...
This shapefile represents proposed management categories (Core, Priority, General, and Non-Habitat) derived from the intersection of habitat suitability categories and lek space use. Habitat suitability categories were derived from a composite, continuous surface of sage-grouse habitat suitability index (HSI) values for northeastern California formed from the multiplicative product of the spring (mid-March to June), summer (July to mid-October), and winter (November to March) HSI surfaces.
Categories: Data;
Types: Downloadable,
Map Service,
OGC WFS Layer,
OGC WMS Layer,
Shapefile;
Tags: California,
Great Basin,
Greater Sage-Grouse,
Habitat,
Nevada,
This dataset contains genomic records from 184 California Gnatcatchers (Polioptila californica) collected at 18 sites in southern California (USA), 13 sites in Baja California (Mexico), and 17 sites in Baja California Sur (Mexico). Genomic markers were generated from ddRAD loci (Peterson and others, 2012) and analyzed using the Stacks v2.53 (Catchen and others, 2013) pipeline. The genotypes for all samples are provided in a VCF file with 84,125 independent loci and 7 percent missing data. A companion file is provided with sample names and occurrence designations. These files may be opened and edited in a text editor program, such as Notepad (PC) or BBEdit (Mac). The .vcf file can be loaded into the Stacks population...
Most of these data were collected in order to create a database of tree locations for use in calibrating remote sensing tools and products, particularly dead tree detection tools and canopy species maps. Data include tree locations, species identification, and status (live, dead, and, if dead, sometimes includes information on foliage and twig retention). They are a collection of different sampling efforts performed over several years, starting in a period of severe drought mortality. One csv table is included that shows data and validation results for an additional dataset that was used to test the NAIP derived dead tree detection model that is associated with this data release. Locations are not included for that...
Categories: Data;
Types: Downloadable,
Map Service,
OGC WFS Layer,
OGC WMS Layer,
Shapefile;
Tags: California,
Forestry,
Kings Canyon National Park,
Sequoia National Park,
Sierra Nevada,
This dataset provides summary statistics of multiple sage-grouse microhabitat characteristics of the Great Basin. These data support the following publication: Coates, P.S., Brussee, B.E., Ricca, M.A., Dudko, J.E., Prochazka, B.G., Espinosa, S.P., Casazza, M.L., and Delehanty, D.J., 2017, Greater sage-grouse (Centrocercus urophasianus) nesting and brood-rearing microhabitat in Nevada and California—Spatial variation in selection and survival patterns: U.S. Geological Survey Open-File Report 2017-1087, 79 p., https://doi.org/10.3133/ofr20171087.
These datasets (S2-S3) document the transmission of a bacterial pathogen (Mycoplasma agassizii) between desert tortoises (Gopherus agassizii) experimentally introduced in captivity and were used to create and compare models predicting transmission probability given data on the hosts and their interactions. Dataset S2 includes variables describing the individual tortoises interacting, e.g. id, sex; variables describing the length of their interaction, e.g., number of days cohabitating, hours of direct contact; and variables estimating the infection level (based on data in S3) of infected tortoises involved in the interaction with the focal host. Interaction time and the amount of bacteria present in an infected...
This shapefile represents habitat suitability categories (High, Moderate, Low, and Non-Habitat) derived from a composite, continuous surface of sage-grouse habitat suitability index (HSI) values for northeastern California formed from the multiplicative product of the spring (mid-March to June), summer (July to mid-October), and winter (November to March) HSI surfaces.
Categories: Data;
Types: Downloadable,
Map Service,
OGC WFS Layer,
OGC WMS Layer,
Shapefile;
Tags: California,
Great Basin,
Greater sage-grouse,
Habitat,
Nevada,
Expansion of renewable energy development is rapidly transforming the Mojave Desert landscape and has the potential to impact Golden Eagles through loss of foraging habitat and reduced prey base. Regional information on Golden Eagle food habits is limited and little is known of how dietary variability influences eagle productivity. We examined diet using motion activated trail cameras and collection of prey remains at 18 nests during two seasons (2014 and 2015). As well as Golden Eagle prey abundance spotlight line transects conducted and data collected throughout the Mojave Desert Ecoregion in 2014 and 2015. The 138 spotlight line transects conducted in 2014 were a uniform 5 km in length, while the 45 spotlight...
Categories: Data;
Types: Map Service,
OGC WFS Layer,
OGC WMS Layer,
OGC WMS Service;
Tags: Biogeography,
Birds of prey,
California,
Diets,
Mojave Desert,
These data are multi-state capture histories of 273 individual San Francisco gartersnakes collected at a site before and after a portion of the site was burned. Data collection began in 2008 and continued until 2013, and the prescribed fire was applied in the fall of 2010. These data support the following paper: Halstead, B. J., Thompson, M. E., Amarello, M. , Smith, J. J., Wylie, G. D., Routman, E. J. and Casazza, M. L. (2018), Effects of prescribed fire on San Francisco gartersnake survival and movement. Jour. Wild. Mgmt.. . doi:10.1002/jwmg.21585
Categories: Data;
Types: Citation,
Map Service,
OGC WFS Layer,
OGC WMS Layer,
OGC WMS Service;
Tags: San Mateo County, CA,
USGS Science Data Catalog (SDC),
Wildlife Biology,
capture-mark-recapture,
capturing (animals),
The Kittlitz’s Murrelet (Brachyramphus brevirostris) is a small, non-colonial seabird endemic to marine waters of Alaska and eastern Russia that may have experienced significant population decline in recent decades, in part because of low reproductive success and terrestrial threats. Although recent studies have shed new light on Kittlitz’s Murrelet nesting habitat in a few discrete areas, the location and extent of other possible nesting areas throughout most of its range remains unclear. This data release consists of (1) nest locations for the Kittlitz’s Murrelet (2) potential Kittlitz’s Murrelet nesting habitat. These data support the following publication (available online early): Jonathan J. Felis, Michelle...
Categories: Data;
Types: Citation,
Map Service,
OGC WFS Layer,
OGC WMS Layer,
OGC WMS Service;
Tags: Kittlitz's Murrelet,
USGS Science Data Catalog (SDC),
biota,
environment,
health,
This dataset contains data pertaining to vegetation type, woody versus herbaceous versus non-vegetated, for a random selection of points within the Santa Monica Mountains National Recreation Area of Southern California. These data were obtained from aerial imagery for the years 1947, 1977, 1995, 2005, and 2014 and were used to determine changes in cover type over time. These data support the following publication: Syphard, A.D., Brennan, T.J. and Keeley, J.E., 2018. Drivers of chaparral type conversion to herbaceous vegetation in coastal Southern California. Diversity and Distributions. https://doi.org/10.1111/ddi.12827
Categories: Data;
Types: Downloadable,
Map Service,
OGC WFS Layer,
OGC WMS Layer,
Shapefile;
Tags: Land Use Change,
Remote Sensing,
Southern California Coastal,
USGS Science Data Catalog (SDC),
biota,
We collected spatial data on birds as part of a broader effort to understand food webs in California Estuaries. The survey area was Carpinteria Salt Marsh, California USA, which comprises 9 Ha tidal channels, 2 Ha salt flats, 17 Ha upland habitat, 6 Ha tidal pans, 52 Ha vegetated marsh, and 2 Ha tidal flats. A fixed transect was walked and birds were mapped if they were in the intertidal habitat. We also included some species, like raptors, if they were perched in adjacent upland habitats, but potentially interact with the estuary. With GIS, these data can be used to evaluate bird distributions, by species, in space and time, in this habitat. There are two data files in this release (1) Bird distribution surveys...
Drainage areas (or watersheds) were calculated for each stream segment in the National Hydrography Dataset High Resolution Plus Beta (NHD HR Plus Beta) using non-end junction points and the provided hydrologically enforced Digital Elevation Model (DEM). The DEM was used to create a flow direction raster. The pour points used were determined from junction points at each stream intersection excluding stream ends (i.e. channel heads are not included). Watershed calculations were automated using the ArcGIS "watershed" tool and then edited manually for accuracy. In western San Diego County (non-desert) there were 39,980 drainage areas calculated. The percent impervious in each watershed was calculated using the National...
Categories: Data;
Types: Downloadable,
Map Service,
OGC WFS Layer,
OGC WMS Layer,
Shapefile;
Tags: Hydrology,
San Diego,
USGS Science Data Catalog (SDC),
Water Resources,
drainage basins,
The spatial data results of USGS surveys for Least Bell's Vireo (Vireo bellii pusillus, LBVI) along the Tijuana River and San Diego River in 2023 to determine abundance and distribution of vireos to facilitate population trend analyses and collect information on dispersal and site fidelity of banded vireos as part of long-term demographic studies at multiple sites.
Categories: Data;
Types: Downloadable,
Map Service,
OGC WFS Layer,
OGC WMS Layer,
Shapefile;
Tags: California,
Ecology,
San Diego,
San Diego River,
Tijuana River,
Dataset contains 32 terrestrial lidar scans of conifer forests and associated shapefile of locations in Sequoia and Kings Canyon National parks from the summer of 2022. These scans were co-located within field plots from a larger ongoing U.S. Geological Survey (USGS) project collecting wildfire fuels and forest structure data (informally known as the Fire and Fuels Project). These data can also be found in a USGS Earth Resources Observation and Science (EROS) database named IntELiMon (https://dmsdata.cr.usgs.gov/lidar-monitoring/viewer/).
Categories: Data;
Types: Downloadable,
Map Service,
OGC WFS Layer,
OGC WMS Layer,
Shapefile;
Tags: Ecology,
Forestry,
Kings Canyon National Park,
Remote Sensing,
Sequoia National Park,
Arid ecosystems are often vulnerable to transformation to invasive-dominated states following fire, but data on persistence of these states are sparse. The grass/fire cycle is a feedback process between invasive annual grasses and fire frequency that often leads to the formation of alternative vegetation states dominated by the invasive grasses. However, other components of fire regimes, such as burn severity, also have the potential to produce long-term vegetation transformations. Our goal was to evaluate the influence of both fire frequency and burn severity on the transformation of woody-dominated communities to communities dominated by invasive grasses in major elevation zones of the Mojave Desert of western...
Categories: Data;
Types: Citation,
Map Service,
OGC WFS Layer,
OGC WMS Layer,
OGC WMS Service;
Tags: Mojave desert,
USGS Science Data Catalog (SDC),
biological invasions,
chronosequence,
community structure,
This shapefile represents habitat suitability categories (High, Moderate, Low, and Non-Habitat) derived from a composite, continuous surface of sage-grouse habitat suitability index (HSI) values for northeastern California during summer (July to mid-October)¸ which is a surrogate for habitat conditions during the sage-grouse brood-rearing period.
Categories: Data;
Types: Downloadable,
Map Service,
OGC WFS Layer,
OGC WMS Layer,
Shapefile;
Tags: California,
Great Basin,
Greater sage-grouse,
Habitat,
Nevada,
Data presented are results of surveys and monitoring in 2019 for San Diego Cactus Wren (Campylorhynchus brunneicapillus) in southern San Diego County. Surveys were conducted at 493 plots. Plots were surveyed twice in 2019 and the number, age (adult or juvenile), banding status (color banded or not), breeding status (paired, unpaired, or unknown), and nesting status (active nest detected or not) of all wrens recorded. Habitat covariate data were collected including amount of dead and stressed cactus in the plot, percent cover of bare ground, and the dominant and percent cover of invasive species. During weekly monitoring visits, nests were located and checked to determine the number of eggs laid, the number of eggs...
Categories: Data;
Types: Downloadable,
Map Service,
OGC WFS Layer,
OGC WMS Layer,
Shapefile;
Tags: California,
San Diego,
animal and plant census,
biota,
birds,
Dr. Richard Janda of the USGS began a channel monitoring program in Redwood Creek in northern coastal California in 1973. The USGS continued this work through 2013, when the Research Geologist, Dr. Mary Madej retired. This effort produced 40 years of channel change data in rivers that were disrupted by severe erosion following timber harvest of old-growth redwood forests, a portion of the program's data (plus 1953 data) has been preserved in this data release. Original field surveys documented bank erosion, aggradation, and degradation at 60 cross-sectional transects at annual or biannual timesteps. Three river reaches also have long-term longitudinal channel bed surveys which document the distribution and development...
Categories: Data,
Publication;
Types: Citation,
Downloadable,
Map Service,
OGC WFS Layer,
OGC WMS Layer,
Shapefile;
Tags: 44 Creek,
Bond Creek,
California,
Dolason Creek,
Elam Creek,
Data includes results collected in the Mohave Desert during 2016 using three survey methods (acoustic recording units, camera traps, and call-count surveys) to detect gamebirds, primarily Gambel's quail (Callipepla gambelii) but also including records of mourning dove (Zenaida macroura), Eurasian collared-dove (Streptopelia decaocto), and chukar (Alectoris chukar). ARU data includes the Selections (portions of the recording identified as potentially containing a Gambel's quail call) and Detections (quail calls confirmed following audible and visual verification of the recording and spectrogram). ARU data provided is summarized into hourly segments where selections occurred among five study sites. Camera trap data...
Categories: Data;
Types: Map Service,
OGC WFS Layer,
OGC WMS Layer,
OGC WMS Service;
Tags: Mohave National Preserve,
Riverside East Solar Energy Zone (SEZ),
USGS Science Data Catalog (SDC),
Wildlife Biology,
biota,
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