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Wildfires are increasing across the western U.S., causing damage to ecosystems and communities. Addressing the fire problem requires understanding the trends and drivers of fire, yet most fire data is limited only to recent decades. Tree-ring fire scars provide fire records spanning 300-500 years, yet these data are largely inaccessible to potential users. Our project will deliver the newly compiled North American Fire Scar Network — 2,592 sites, 35,602 trees, and > 300,000 fire records — to fire scientists, managers and the public through an online application that will provide tools to explore, visualize, and analyze fire history data. The app will provide raw and derived data products, graphics, statistical summaries,...
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The purpose of this project was to support the enhanced search, access, and visualization capability for disaster maps and other contributed products on the public USGS Hazards Data Distribution System (HDDS) (U.S. Geological Survey, 2015). These products are often provided to USGS by collaborators for sharing across the response community during the course of an emergency event response; however, in the past, they were not easy for users to discover or access. This project involved the design, testing, and delivery of a new capability for HDDS to ingest, catalog, and display informational or value-added products when provided in a variety of formats. As a result of this work, the user community will be able to...
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Science is an increasingly collaborative endeavor. In an era of Web-enabled research, new tools reduce barriers to collaboration across traditional geographic and disciplinary divides and improve the quality and efficiency of science. Collaborative online code management has moved project collaboration from a manual process of email and thumb drives into a traceable, streamlined system where code can move directly from the command-line onto the Web for discussion, sharing, and open contributions. Within the USGS, however, data have no such analogous system. To bring data collaboration and sharing within the USGS to the next level, we are missing crucial components. The sbtools project team built sbtools, an R interface...
The source code for the NWIS Snapshot tool was released on GitHub as a product of the 2012 CDI-funded project NWIS Web Services Snapshot for ArcGIS. The NWIS Web Services Snapshot represents the next generation of data retrieval and management. The newest Snapshot tool allows instant access to NWIS data from four different web services through ArcGIS, software available to all USGS scientists in all mission areas. Increased data retrieval efficiency reduces the steps required to retrieve and compile water data from multiple sites from what can be more than 30 steps to just a few clicks. As an end-user education tool, it promotes use of NWIS data from both web services and the NWIS database, which increases the...
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The goal of this project was to maximize the value of expensive animal tagging data. We developed an interactive web application to help scientists understand patterns in their own tagging datasets and to help scientists, funders and agencies communicate tagging data to decision-makers and to the general public. Interactive visualizations have emerged recently as a valuable tool for identifying patterns in complex datasets that are typical of ecological tagging studies. To make it easier and faster for users to gain access to interactive movement visualizations, we developed the algorithms and web-based software platform to allow users to upload their own data into a data visualization showing dynamic movement of...
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Identifying, extracting, and mobilizing information from current and historical literature is a time-consuming part of organizing and collating synthetic data productions. This project explored the use of algorithm-based methods to identify and extract occurrence information from the GeoDeepDive (GDD) literature database to support upkeep of the Nonindigenous Aquatic Species (NAS) data. The GeoDeepDive API was extended to include query capabilities on terms from the Integrated Taxonomic Information System (ITIS). This functionality helped support identification of literature mentioning/focusing on species that are tracked by the Nonindigenous Aquatic Species Database. These methods were paired with algorithms to...
Scientists who study coastal ecosystems and hazards such as hurricanes, flooding, and cliff failure collect lots of photographs of coastal environments from airplanes and drones. A large area can be surveyed at high resolution and low cost. Additionally, satellites such as Landsat have provided imagery of the Nation’s coastlines every few days for decades. Scientist’s ability to understand coastal hazards would be greatly improved if this wealth of imagery could be ‘mined’ automatically by computers. We want to automate the process of identifying and labelling each region of the image from a set of categories (e.g. bare land, water, woody vegetation, herbaceous vegetation). We need to train a computer to recognize...
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Computational models are important tools that aid process understanding, hypothesis testing, and data interpretation. The ability to easily couple models from various domains such as, surface-water and groundwater, to form integrated models will aid studies in water resources. This project investigates the use of the Community Surface Dynamics Modeling System (CSDMS) Modeling Framework (CMF) to couple existing USGS hydrologic models into integrated models. The CMF provides a Basic Model Interface (BMI), in a range of common computer languages, that enables model coupling. In addition, the CMF also provides a Python wrapper for any model that adopts the BMI. In this project the Precipitation-Runoff Modeling...
The National Water Information System (NWIS) Web Services Snapshot Add-In (content no longer available) gives ArcGIS users the ability to query NWIS web services and download a “snapshot” of NWIS data from the web services to a geodatabase. The geodatabase, provided with the Snapshot Add-In installation files, has built-in relationships between sites and measurements taken at each site so users can run powerful queries, import tables and build new relationships with the NWIS data, and edit the data while maintaining the built-in relationships. After requesting data from NWIS web services and populating the geodatabase, standard ArcGIS functions may then be used to visualize, analyze, and export data to other analysis...
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The cloud offers new and exciting opportunities for USGS employees to leverage computing resources and services that can quickly improve their workflows and reduce expenditures typically associated with establishing a comparable environment with physical infrastructure. However, due to the novelty of access to and use of the cloud environment, there is limited documentation and shared examples detailing how those resources and services are being used across the USGS. Developing a platform that allows cloud users to contribute to the available documentation and provides a location to consolidate information relevant to operating in the USGS cloud will help to decrease duplication of efforts across projects that share...
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Rangeland systems are some of our nation’s largest providers of agro-ecological services, sustaining plant productivity that is highly variable across seasons and years. Although the ability to predict the upcoming growing season’s rangeland productivity would have enormous economic and management value – such as for making decisions about cattle stocking rates, fire, restoration, and wildlife – the ability to provide these forecasts has remained poor. New remote sensing and modeling technologies allow for dramatic improvements to near-term forecasts of rangeland productivity. With this project, our multi-disciplinary team has shown that, compared with traditional remote sensing greenness indices, NIRv-based (NIR...
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The purpose of this project was to document processes for USGS scientists to organize and share data using ScienceBase, and to provide an example interactive mapping application to display those data. Data and maps from Chase and others (2016a, b) were used for the example interactive maps. Principal Investigator : Katherine J Chase, Andy Bock, Thomas R Sando Accomplishments The accomplishments for this project are described below. The project team developed an interactive mapping application in R that connects to data on ScienceBase, using Shiny, Leaflet (Cheng and Xie, 2016), and sbtools (Winslow and others, 2016) (fig. 10). USGS scientists can refer to the R code in the mapping application to build their...
The USGS National Land Cover Trends Project has the largest repository of field photos at the USGS (over 33,000 photos). Prior to CDI funding, Land Cover Trends had limited funding to make the national collection of photos available online for researchers, land managers, and citizens. The goal of this CDI project was to add geotags and keywords to the digital copies of each field photo and make the collection searchable and downloadable via the Internet. By funding the effort to integrate Land Cover Trends field photography and online mapping technology, CDI has helped provide access to geographic data needed to conduct science and support policy decisions. Sharing georeferenced photography distributed across the...
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Large online data catalogs use controlled vocabularies to categorize datasets in ways that allow end users to sort and select data matching their needs. The eventual goal of this project is to build functional services so that the USGS Thesaurus and other USGS-controlled vocabularies will be available to the English-speaking scientific community, especially within the USGS where they can be used to improve metadata quality and data discovery. The project team used the Tetherless World Constellation (TWC) Semantic Web Methodology, which is designed to examine use cases and determine both functional and nonfunctional system requirements without prejudicial commitments to meeting those requirements by utilizing particular...
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Legacy data (n) - Information stored in an old or obsolete format or computer system that is, therefore, difficult to access or process. (Business Dictionary, 2016) For over 135 years, the U.S. Geological Survey has collected diverse information about the natural world and how it interacts with society. Much of this legacy information is one-of-a-kind and in danger of being lost forever through decay of materials, obsolete technology, or staff changes. Several laws and orders require federal agencies to preserve and provide the public access to federally collected scientific information. The information is to be archived in a manner that allows others to examine the materials for new information or interpretations....
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The goal of this project is to improve the USGS National Earthquake Information Center’s (NEIC) earthquake detection capabilities through direct integration of crowd-sourced earthquake detections with traditional, instrument-based seismic processing. During the past 6 years, the NEIC has run a crowd-sourced system, called Tweet Earthquake Dispatch (TED), which rapidly detects earthquakes worldwide using data solely mined from Twitter messages, known as “tweets.” The extensive spatial coverage and near instantaneous distribution of the tweets enable rapid detection of earthquakes often before seismic data are available in sparsely instrumented areas around the world. Although impressive for its speed, the tweet-based...
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The purpose of the Data Management Training (DMT) Clearinghouse project was twofold. First, the project aimed to increase discoverability and accessibility of the wealth of learning resources that have been developed to inform and train scientists about data management in the Earth sciences. Secondly, the project team wanted to facilitate the use of these learning resources by providing descriptive information (metadata) that can help research scientists, students, or teachers assess whether the resource would be appropriate and useful for their needs. The project team established the following objectives for the project: Create an online, searchable, and browsable clearinghouse of learning resources on data...
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The Nonindigenous Aquatic Species (NAS) Database and Alert System (https://nas.er.usgs.gov/default.aspx) provides a framework for the rapid dissemination of new invasions as they are incorporated into the NAS Database. The system notifies registered users of new sightings of >1,330 non-native aquatic species as part of national-scale early detection and rapid response systems (EDRR), and in support of several federal programs: National Invasive Species Council, Aquatic Nuisance Species Task Force, and other Department of the Interior agencies. The NAS group has developed a new tool, the Alert Risk Mapper (ARM; https://nas.er.usgs.gov/AlertSystem/default.aspx), to characterize river reaches, lakes, and other waterbodies...
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This project team developed a Web-hosted application (that can also be used on mobile platforms) for automatic analysis of images of sediment for grain-size distribution, using the “Digital Grain Size” (DGS) algorithm of Buscombe (2013) (“DGS-Online,” 2015). This is a free, browser-based application for accurately estimating the grain-size distribution of sediment in digital images without any manual intervention or even calibration. It uses the statistical algorithm of Buscombe (2013) that estimates particle size directly from the spatial distribution of light intensity within the image. The application is designed to batch-process tens to thousands of images, utilizing cloud computing storage and processing technologies....
2012 Updates (from the 2012 CDI Annual Review): This proposal would continue the building of website content, including: best practices, tools, recommended reading, and data management planning tool. It also includes a usability testing on the website. It also calls for on-going maintenance of the website and its content. Principal Investigator : Heather S Henkel, Vivian B Hutchison Cooperator/Partner : Michelle Y Chang, Lisa Zolly, Rebecca Uribe, Trent Faust Benefits USGS researchers will have easy access to the standards, tools, and best practices Centralized, CDI-vetted reference for scientists Deliverables A Data Management Web site: www.usgs.gov/datamanagement/ Poster presented and demonstration given...
map background search result map search result map Developing a USGS Legacy Data Inventory to Preserve and Release Historical USGS Data Developing a USGS Legacy Data Inventory to Preserve and Release Historical USGS Data