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This dataset includes microsatellite genotypes for 44 collections of Habroscelimorpha dorsalis dorsalis and 14 collections of H. d. media distributed from Massachusetts to Florida, United States.
These data consist of a multi-trophic, day vs. night, nearshore to offshore transect approach for data collection for this Cooperative Science and Monitoring Initiative effort at two northwestern Lake Huron sites near Hammond Bay and Thunder Bay, Michigan. Zooplankton and Mysis samples were collected monthly from April-October while benthos and prey fish samples were collected seasonally during Spring, Summer, and Fall. Invertebrate taxa (zooplankton, Mysis, benthic macroinvertebrates) were identified, enumerated, and measured using a dissecting microscope. Diet items of the prey fish were processed similarly to the other samples in terms of taxonomy. These data were used to calculate densities of fish prey items...
This dataset contains four tables: (1) site, regression and weighted peak flow estimates (peak_flow_estimates.csv) (2) site, regression and weighted low flow estimates (low_flow_estimates.csv) (3) basin characteristics for peak flow sites (peak_basin_stats.csv) (4) basin characteristics for low flow sites (low_basin_stats.csv). These tables support the USGS report "Magnitude and Frequency of Peak Flows and Low Flows on Nontidal Streams in Delaware."
Categories: Data;
Tags: Delaware,
Maryland,
New Jersey,
Pennsylvania,
USGS Science Data Catalog (SDC),
Across the country, public land managers make hundreds of decisions each year that influence landscapes and ecosystems within the lands they manage. Many of these decisions involve vegetation manipulations known as land treatments. Land treatments include activities such as removal or alteration of plant biomass, seeding burned areas, and herbicide applications. Data on these land treatments historically have been stored at local offices and gathering information across large spatial areas was difficult. These valuable data needed to be centralized and stored for Federal agencies involved in land treatments because these data are useful to land managers for policy and management and to scientists for developing...
The U.S. Army Corps of Engineers' Upper Mississippi River Restoration (UMRR) program, through its Long Term Resource Monitoring (LTRM) element, collected aerial imagery of the systemic Upper Mississippi River System (UMRS) during the summer of 2020. A Land Cover/Land Use (LCU) spatial database was developed based on the 2020 aerial imagery, which adds a fourth systemic-wide database to the existing 1989, 2000, and 2010/11 LCU databases. While a crosswalk was used to update the 1989 LCU database (originally developed using a different classification system), the 2000, 2010/11, and 2020 LCU databases share the same classification, making them directly comparable from a classification standpoint. Furthermore, protocols...
Categories: Data;
Types: Downloadable,
Map Service,
OGC WFS Layer,
OGC WMS Layer,
Shapefile;
Tags: Iowa,
USGS-EMA-LOW-MR Landscape Ecology,
USGS-EMA-LOW-PL Mississippi River,
Wisconsin,
aquatic vegetation,
We collected snow density measurements at camera sites from December 2020 - April 2021, at the same time as snow hardness measurements. We took measurements every few weeks as logistics allowed. We took samples near the camera site in snow visually similar to the snow in the camera viewshed (the geographical area that is visible from a location) to prevent snow conditions from being disturbed beyond normal camera deployment. We took snow density samples using a homemade prairie sampler in snow depths < 100 cm and using a federal snow sampler in snow depths > 100 cm. The sampler was inserted into the snow to remove a snow core. We retained the core if the depth of snow in the sampler was at least 90% of the actual...
Categories: Data,
Publication;
Types: Citation;
Tags: Idaho,
Latah,
Moscow Mountain,
Odocoileus virginianus,
biota,
The dwarf wedgemussel (Alasmidonta heterodon) is a federally endangered freshwater mussel that once ranged from New Brunswick to North Carolina, but now only exists in isolated populations throughout its diminished range. This study aimed to understand links between fish abundance and dwarf wedgemussel abundance and occurrence in the Connecticut and Delaware watersheds. Specifically, my study objectives were to 1) characterize fish assemblages near dwarf wedgemussel locations and unoccupied locations, 2) determine if dwarf wedgemussel occurrence and abundance are related to abundance of the known host fish species, tessellated darter and other potential host fish species per St. John White et. al. (2017). Two fish...
Data used to test a video monitoring and computational system for estimating juvenile fish abundance
We developed and tested neural network-based models to recognize and count emigrating juvenile river herring in continuous video. Continuous video was collected from an underwater camera installed at Great Herring Pond in Bourne, Massachusetts (USA) between June and November 2017. Our algorithm extracts video frames to assess presence/absence of fish and count numbers of fish emigrating. We used extracted video frames to assess model performance. Provided datasets include information about extracted frames that were used for model assessment. This data release includes four datasets that were used to test model performance and select the best fitting model. (1) The “Model Evaluation Dataset” includes count and presence/absence...
Categories: Data;
Tags: Ecology,
New England, Massachusetts, Cape Cod,
USGS Science Data Catalog (SDC),
biota
Data presented are results of surveys in 2021 for San Diego Cactus Wren (Campylorhynchus brunneicapillus) in southern San Diego County. Surveys were conducted at 378 plots. Plots were surveyed twice in 2021 and the number, age (adult or juvenile), banding status (color banded or not), and breeding status (paired, unpaired, or unknown) of all wrens recorded. Habitat covariate data were collected including amount of dead and stressed cactus in the plot, percent cover of bare ground, and the dominant and percent cover of invasive species.
Categories: Data;
Types: Downloadable,
Map Service,
OGC WFS Layer,
OGC WMS Layer,
Shapefile;
Tags: California,
San Diego,
animal and plant census,
biota,
birds,
Data presented are results of surveys in 2021 for Southwestern Willow Flycatcher (Empidonax traillii extimus) in San Diego County, California. Surveys were conducted at the 2016-19 nest monitoring locations (Cleveland National Forest, Rey River Ranch, and Vista Irrigation District) and at Lake Henshaw along the Upper San Luis Rey River. Surveys were conducted along multiple sections of the river where permission to access properties could be obtained. Locations were surveyed using a standardized protocol three to four times between 15 May and 31 July. The number, age (adult or juvenile), sex, banding status (color banded or not, and if so, color combination), and breeding status (paired, undetermined, or transient)...
Categories: Data;
Types: Downloadable,
Map Service,
OGC WFS Layer,
OGC WMS Layer,
Shapefile;
Tags: San Diego,
San Luis Rey River,
biota,
birds,
endangered species,
This dataset describes mesopredator locations (raccoons and striped skunks), dabbling duck nest locations (mallard, gadwall, and cinnamon teal), northern harrier nest locations, and random locations in relation to a set of habitat features in Suisun Marsh, California during 2016 through 2019. We designed a series of questions to link fine-scale predator movements and vulnerability of dabbling duck nests to predator encounters and egg predation. We conducted our study over a 4-year period using 41 GPS-collared raccoons and striped skunks, two of the most widespread mammalian predators of waterfowl eggs in North America, and more than 2000 monitored duck nests. Each night of movement for mesopredators contains the...
Categories: Data;
Tags: California,
Suisun Marsh,
USGS Science Data Catalog (SDC),
Wildlife Biology,
animal behavior,
These data represent trapping effort and captures of deer mice at Point Reyes National Seashore, Marin County, California. Deer mice were captured and marked with ear tags to allow identification of individuals. The location of captures can be used in a spatially explicit capture recapture model to estimate density of mice and how mouse density varies by site and habitat type.
Categories: Data;
Types: Downloadable,
Map Service,
OGC WFS Layer,
OGC WMS Layer,
OGC WMS Service,
Shapefile;
Tags: California,
Ecology,
Marin County,
Point Reyes National Seashore,
USGS Science Data Catalog (SDC),
The Hawaii Forest Bird Survey (HFBS) systematically characterized plant and bird communities across transects spanning all major Hawaiian Islands except O‘ahu. This extensive dataset has now been organized into a database and associated geographic information system (GIS) layers. This baseline provides an opportunity to assess how forest ecosystems and their constituent bird and plant populations have changed over time. As part of the HaBiTATS (Hawaiian Biodiversity Trends Across Time and Space) project, a select area on Hawai‘i Island was surveyed in 2015 with the objective of demonstrating the potential of using the HFBS methodology to reassess the status of bird and plant communities across multiple geographic...
The Hawaii Forest Bird Survey (HFBS) systematically characterized plant and bird communities across transects spanning all major Hawaiian Islands except O‘ahu. This extensive dataset has now been organized into a database and associated geographic information system (GIS) layers. This baseline provides an opportunity to assess how forest ecosystems and their constituent bird and plant populations have changed over time. As part of the HaBiTATS (Hawaiian Biodiversity Trends Across Time and Space) project, a select area on Hawai‘i Island was surveyed in 2015 with the objective of demonstrating the potential of using the HFBS methodology to reassess the status of bird and plant communities across multiple geographic...
Hawaiian hoary bats (Lasiurus cinereus semotus) were captured at multiple locations on the east side of Hawaii Island from May 2019 to October 2019. Radio transmitters were affixed to captured bats and, when possible, radio telemetry was used to locate bats in trees used for day-roosts. In 2019, three maternity roosts were identified however only two were suitable for video recording. Thermal video recording at two maternal roosts was used to identify the time of bat departure and arrival at a roost. We examined an average of 2 hours during sunset and sunrise (range = 0.9 to 5.4 hours). The time of bat departure from a roost ranged from 53 minutes before sunset to 20 minutes after sunset (n = 48, mean = 2.7 minutes...
These data include Ceratocystis culture viability results from ambrosia beetle (Coleopetera: Scolytinae) frass. Frass is defined as fine particles of macerated wood or boring dust, beetle parts, and feces. Frass was collected from individual ambrosia beetle galleries in Ceratocystis-infected ʻōhiʻa (Metrosideros polymorpha) trees on Hawaiʻi Island, a phenomenon referred to as Rapid ʻŌhiʻa Death (ROD). We recorded the height at which these beetles produced frass, how long we collected frass from galleries, and the total number of culturing tests from individual galleries.
Hawaiʹi’s most widespread native tree, ʹōhiʹa lehua (Metrosideros polymorpha), has been dying across large areas of Hawaiʹi Island mainly due to two fungal pathogens (Ceratocystis lukuohia and Ceratocystis huliohia) that cause a disease collectively known as Rapid ʹŌhiʹa Death (ROD). Here we examine patterns of positive detections of C. lukuohia as it has been linked to the larger mortality events across Hawaiʹi Island. Our analysis compares the environmental range of C. lukuohia and its spread over time through the known climatic range and distribution of ʹōhiʹa. This data set is a georeferenced raster file, containing the projected potential presence of C.lukuohia across the main Hawaiian Islands using climatic...
Categories: Data;
Types: Downloadable,
GeoTIFF,
Map Service,
Raster;
Tags: Ceratocystis lukuohia,
Hawaii,
Metrosideros polymorpha,
Ohia,
Rapid Ohia death,
We analyzed very-high-resolution imagery to assess status of Metrosideros polymorpha forests across an 83,603 hectare study area that experienced extensive canopy dieback in the 1970s on the eastern side of the island of Hawaii. Using GIS we generated 1170 virtual vegetation plots with a 100 m radius; 541 plots in areas mapped in 1977 with trees dead or mostly defoliated (dieback), and 629 plots in adjacent wet forest habitat, previously mapped as non-dieback condition. In each plot we estimated the percent of M. polymorpha trees dead or mostly defoliated, and percent of trees with healthy crowns. These results were combined with habitat data to produce a spatial model depicting probability of canopy dieback within...
Categories: Data;
Tags: Hawaii,
Metrosideros polymorpha,
biota,
canopy dieback,
field inventory and monitoring,
Several previously published reports and geographic information system (GIS) data layers were used to code information on site attributes for each assessment plot using the spatial join tool in ArcMap. This information was used for an analysis of dieback and non-dieback habitat characteristics. The results of this analysis are presented in this table which depicts the probability of heavy to severe canopy dieback occurring at some time at a particular 30 x 30 m pixel location within the study area.
Categories: Data;
Tags: Hawaii,
Metrosideros polymorpha,
analytical modeling,
biota,
canopy dieback,
Observers at Hakalau Forest National Wildlife Refuge recorded the use by birds of koa (Acacia koa) and ohia (Metrosideros polymorpha) trees in two sites that were recovering from ungulate disturbance and two reforestation sites where trees had been planted. Observations were made pre- and post-defoliation of koa trees by koa moths (Scotorythra paludicola) during 2013. Focal trees at each site were selected haphazardly and observed for 2 minutes to determine the total number individual birds that visited the tree. Birds were counted when they were already present or as they flew into a tree during the 2-minute period, regardless of whether they departed before the end of the observation period. Birds were identified...
Categories: Data;
Tags: Hakalau Forest National Wildlife Refuge,
Hawaii Island,
biota,
body mass,
diet,
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