Filters: Tags: {"type":"Harvest Set"} (X) > Categories: Data (X) > partyWithName: Ecosystems (X) > partyWithName: Nathan A Johnson (X)
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Freshwater mussels (Unionidae) are among the most imperiled groups of organisms in the world. Unionids are plagued with a lack of basic information regarding species distributions, life history characteristics, and ecological and biological requirements. We assessed the influence of hydrologic factors on the occurrence of the Suwannee Moccasinshell, Medionidus walkeri, a federally threatened freshwater mussel species endemic to the Suwannee River basin in Georgia and Florida. We also assessed the influence of survey effort on detection of M. walkeri during field surveys. All current (2013-2016) mussel survey records in the Suwannee River Basin were compiled, and cumulative discharge contributed by upstream springs...
Categories: Data;
Tags: Conservation,
Distribution,
Hydrology,
Ichetucknee River,
Imperiled species,
An important physiological constraint influencing distributions of coastal freshwater organisms is their tolerance for saline conditions. We experimentally evaluated salinity tolerance for three freshwater mussel species (Utterbackia imbecillis, Elliptio jayensis, and Glebula rotundata). Mussels were transferred abruptly from well water to one of five treatments (0 [control], 6, 12, 18 or 24 parts per thousand [ppt]) with no acclimation. Utterbackia imbecillis survived on average about 2 days at treatments ≥ 6 ppt, while Elliptio jayensis survived slightly longer (about 4 days). Glebula rotundata was most tolerant to salinity, surviving as well at 6 and 12 ppt as it did in the control. Additionally, G. rotundata...
Categories: Data;
Tags: Aquatic Biology,
Environmental Health,
Florida,
USGS Science Data Catalog (SDC),
biota,
We provide genetic and distribution data for the Louisiana Pigtoe, Pleurobema riddellii, to guide decisions related to federal protection for the species under the U.S. Endangered Species Act. Our final dataset includes 125 COI sequences generated as part of our study representing P. riddellii from eight North American river basins. This includes the COI sequence we generated from a museum specimen collected from the Trinity River in the late 1900s, which is the first genetic confirmation of P. riddellii in the Trinity River basin. Also included are sequences from specimens initially identified as Fusconaia cerina (n=3) Fusconaia flava (n=1), Fusconaia sp. (n=5), Pleurobema sintoxia (n=10), and Pustulosa pustulosa...
Here we present the data collected during a mark-recapture study on freshwater mussels in Bruce Creek, Walton County, Florida. These data were used to evaluate the non-lethal impacts of a gill sampling protocol to assess gravidity of freshwater mussels. Data were collected every four weeks, or as weather permitted, to be able to monitor the reproductive status of each mussel every month of the year. The dataset includes unique tag numbers to identify specific female mussels captured and recaptured during this study. Genus and species were identified, and the gravidity status was evaluated for each individual mussel.
Categories: Data;
Tags: Aquatic Biology,
Florida,
USGS Science Data Catalog (SDC),
United States,
aquatic biology,
Here we provide public access to six DNA sequence alignments and details on all specimens utilized in Smith and Johnson (2020).
Categories: Data;
Tags: DNA,
USGS Science Data Catalog (SDC),
biota,
conservation,
freshwater mussel,
Longstanding taxonomic uncertainties have limited conservation efforts for species currently assigned to the freshwater mussel genus Alasmidonta. Here, we present mitochondrial and nuclear DNA sequence data needed to assess the genus- and species-level taxonomy of Alasmidonta. These molecular data allowed us to test whether cryptic diversity exists within Alasmidonta and whether A. triangulata and A. arcula are distinct species. Details associated with specimens and DNA sequence data are provided here to provide a foundation for future research on Alasmidonta and give conservation agencies greater confidence in the findings of our work.
Categories: Data;
Tags: DNA sequencing,
Genetics,
USGS Science Data Catalog (SDC),
biota,
conservation genetics,
We generated multilocus DNA sequence data and traditional morphometric measurements to evaluate species boundaries in Fusconaia mitchelli. We sequenced three loci: the protein-coding mitochondrial DNA genes cytochrome oxidase subunit 1 and NADH dehydrogenase 1, and the nuclear ribosomal internal transcribed spacer 1. We also took three measurements, maximum length, maximum width, and maximum height, of mussel shells for morphometric analysis.
Here we provide public access to three DNA sequence alignments (COI, ND1, ITS1) and details on all specimens utilized in Keogh et al. (in review).
Red lionfish (Pterois volitans) have become a successful invasive predator across the Northwestern Atlantic, Caribbean, and Gulf of Mexico (GoM). Previous investigations have identified the southeast coast of Florida as the original site of introduction, but no region-wide genetic study has directly addressed the question of introduction location(s). This dataset includes previously unpublished red lionfish samples (n = 237) from six locations: The Bahamas, Florida Keys, Northwest Florida, North Carolina, Panama, and Southeast Florida. Sequences archived in NCBI from other locations in the Northern Region, Caribbean, and Gulf of Mexico basins were used in the analyses (N = 1558). Previously published sequences were...
Conservation of imperiled species is frequently challenged by insufficient knowledge of life history and the environmental factors that affect various life stages. The larvae (glochidia) of most freshwater mussels in the family Unionidae are obligate ectoparasites of fishes. We describe the early life history of the federally endangered Southern Kidneyshell, Ptychobranchus jonesi, and compare methods for estimating fecundity and conducting host trials on conglutinate-producing mussel species. Both the glochidial inoculation baths and direct feeding of conglutinates to Percina nigrofasciata, Etheostoma edwini, and Etheostoma fusiforme resulted in successful metamorphosis to the juvenile life stage. Ptychobranchus...
Categories: Data;
Types: Citation;
Tags: Pea River, Coffee County, Alabama,
USGS Science Data Catalog (SDC),
biogeography,
endangered species,
population and community ecology
Here we provide the molecular datasets and metadata associated with specimens used in the investigation of species boundaries and phylogeographic structure of two freshwater mussels, one common (Pleurobema sintoxia) and one being considered for protection under the Endangered Species Act (Pleurobema rubrum).
Categories: Data;
Tags: Eastern United States,
Genetics,
USGS Science Data Catalog (SDC),
biota,
conservation genetics,
Inaccurate systematics confound our ability to determine evolutionary processes that have led to the diversification of many taxa. The North American freshwater mussel tribe Lampsilini, Ihering, 1901, is one of the more well-studied groups in Unionidae; however, many supraspecific relationships between lampsiline genera remain unresolved. Two genera that have been largely overlooked are Leptodea and Potamilus, which have both been hypothesized to be non-monophyletic. We set out to resolve supraspecific relationships in Lampsilini and test the monophyly of Leptodea and Potamilus using an integrative approach. Here we present details on our molecular, morphological, and distribution data.
Categories: Data;
Tags: Aquatic Biology,
Genetics,
Texas,
USGS Science Data Catalog (SDC),
United States,
This dataset supports the inclusion of Anodontoides radiatus in the genus Strophitus, introducing the binomial Strophitus radiatus. These data also provide strong support for paraphyly in Strophitus and advocate the resurrection of the genus Pseudodontoides to represent the binomials Pseudodontoides connasaugaensis and Pseudodontoides subvexus.
Categories: Data;
Types: Citation;
Tags: USGS Science Data Catalog (SDC),
biota,
cryptic species,
generic reclassification,
incomplete lineage sorting,
Here we provide public access to two mitochondrial DNA sequence alignments, multi-locus microsatellite DNA genotypes, morphometric measurements and details on all specimens utilized in Morrison et al., 2021 (In press).
The widespread distribution of Strophitus undulatus, as well as high intraspecific morphological variation, has led previous authors to doubt the taxon is representative of a single species. Here we provide detailed information for all the freshwater mussels and associated DNA sequence data utilized to test species boundaries in S. undulatus. These molecular data, in combination with morphological data and results from species distribution models, support the recognition of an undescribed freshwater mussel species endemic to streams along the Edwards Plateau in the Colorado River basin in Texas, USA.
Categories: Data;
Tags: Aquatic Biology,
DNA sequencing,
Genetics,
USGS Science Data Catalog (SDC),
biota,
The North American freshwater mussel tribe Quadrulini has a suite of life history adaptations, however, the evolution of life histories in this group has yet to be explored using comparative phylogenetic methods. Here we provide the AHE DNA sequence alignment representing 27 species from the subfamily Ambleminae that was used to estimate a phylogenomic reconstruction of Quadrulini. Additionally, we provide a compilation of host use information and larval length and height measurements utilized to trace the evolution of life history characteristics, such as larval morphology and host attraction strategy. Phylogenetic trees are presented representing phylogenetic inference performed under Maximum Likelihood, Maximum...
Categories: Data;
Tags: Aquatic Biology,
DNA sequencing,
Genetics,
USGS Science Data Catalog (SDC),
biota,
Invasive Burmese pythons (Python bivittatus) have been reproducing in the Florida Everglades since the 1980s. Introduction of the species was either due to unintentional escapes or intentional releases from snakes obtained through the commercial pet trade. Burmese pythons have caused a precipitous decline in small mammal populations in south Florida. To better understand the invasive population, two mitochondrial loci (mtDNA; 1398 bps) were sequenced on 426 snakes and 22 microsatellites were genotyped on 389 snakes. Concatenated cytochrome b and cytochrome oxidase 1 mtDNA sequences produced six haplotypes with a nucleotide and haplotype diversity of π=0.002 and h=0.097, respectively. The dominant haplotype was highly...
Categories: Data;
Types: Citation;
Tags: Big Cypress National Preserve,
Everglades,
Everglades National Park,
Florida,
Florida Keys,
We examined species boundaries within an imperiled group of freshwater mussels in the genus Cyclonaias (Bivalvia: Unionidae) using morphometrics, molecular phylogenetics, and multispecies coalescent models to help guide pending conservation assessments and legislative decisions. Congruence across all lines of evidence indicated that current taxonomy overestimates diversity in the C. pustulosa species complex, while underestimating diversity in the C. nodulata species complex. Here we provide all molecular, morphological, and collection information collected and analyzed in our investigation.
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