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(i) This dataset presents macroscopic and microscopic pathological findings and bacteriology of 178 tadpoles diagnosed with Severe Perkinsea Infections. (ii) Specimen were collected and submitted to the NWHC as part of mortality investigations and collection of specimen from apparently healthy populations as part of ongoing amphibian health monitoring. (iii) Necropsies and gross evaluation of carcasses were carried out under a dissecting microscope. (iv) Severe Perkinsea Infection was confirmed in each specimen by histological observation of pathological changes in tissues with presence of Perkinsea-like organisms in at least one organ, including brain, eyes, gastrointestinal tract, gills, heart, liver, lungs, kidney,...
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These data were collected as part of a field trial to test the effectiveness of a sylvatic plague vaccine (see Rocke et al., 2017 for details). Vaccine and control plots were selected randomly from the available pairs at each location. Baits containing Rhodamine B, a biomarker, were distributed at each plot. At least 1 week and no more than 2 months post-baiting each year, local collaborators captured, marked, and sampled prairie dogs. Hair and whisker samples were collected from up to 50 unique prairie dogs from each plot each year. Sex, age, weight, and the identity of all current-year and prior-year recaptures were recorded for each captured animal. In the laboratory, hair/whiskers were assessed for the presence...
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These data represent trapping effort and captures of deer mice at Point Reyes National Seashore, Marin County, California. Deer mice were captured and marked with ear tags to allow identification of individuals. The location of captures can be used in a spatially explicit capture recapture model to estimate density of mice and how mouse density varies by site and habitat type.
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RBRduo pressure and temperature sensors, mounted on aluminum frames, were moored in shallow (< 6 m) water depths in Skagit and Bellingham Bays, Washington, USA, from December 2017 to February 2018, to capture wave heights and periods. Continuous pressure fluctuations are transformed into surface-wave observations of wave heights, periods, and frequency spectra at 30-minute intervals.
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This data release presents beach topography and nearshore bathymetry data from repeated surveys in northern Monterey Bay, California to document changes in shoreline position and coastal morphology as they relate to episodic (storms), seasonal, and interannual and longer (e.g. El Niño) processes. The ongoing monitoring program was initiated in October 2014 with semi-annual surveys performed in late summer (September or October) and Spring (March). Nearshore bathymetry and topography data were collected along a series of shore-perpendicular transects spaced primarily at 50-250 m intervals between Santa Cruz and Moss Landing, California (fig. 1). The transects were located along sandy stretches of the coastline...
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We characterized seafloor sediment conditions near the mouth of the Elwha River from underwater photographs taken every four hours from September 2011 to December 2013. A digital camera was affixed to a tripod that was deployed in approximately 10 meters of water (Tripod location from September 2011 to April 2013: 48.15333, -123.55931; tripod location from April 2013 to December 2013: 48.15407, -123.55444). Each photograph was qualitatively characterized as one of six categories: (1) base, or no sediment; (2) low sediment; (3) medium sediment; (4) high sediment; (5) turbid; or (6) kelp. For base conditions, no sediment was present on the seafloor. Low sediment conditions were characterized by a light dusting of...
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The U.S. Geological Survey in cooperation with the Grand River Dam Authority completed a high-resolution multibeam bathymetric survey to compute a new capacity and surface-area table. The capacity and surface-area tables describe the relation between the elevation of the water surface and the volume of water that can be impounded at each given water-surface elevation. The capacity and surface area of Grand Lake O’ the Cherokees were computed from a Triangular Irregular Network (TIN) surface created in Global Mapper Version 21.0.1. The TIN surface was created from three datasets: (1) a multibeam bathymetric survey of Grand Lake O’ the Cherokees in 2019 (Hunter and others 2020), (2) a 2017 USGS bathymetric survey...
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This dataset contains absolute-gravity data collected by the USGS Southwest Gravity Program, a collaborative effort of the Arizona, California, and New Mexico Water Science Centers to monitor and model groundwater-storage change. Data were collected following the methods in "Procedures for Field Data Collection, Processing, Quality Assurance and Quality Control, and Archiving of Relative and Absolute-Gravity Surveys", U.S. Geological Survey Techniques and Methods book 2, chapter D4 . All data are reviewed and approved. Additional gravity data, including network-adjusted relative- and absolute-gravity data, may be available in ScienceBase Data Releases.Gravity data are provided as two files:sgp_agdb_stations_YYYY-MM-DD.csv...
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A site in north eastern MI, Oscoda Township, has some of the highest recorded exposure in birds to perfluorinated substances (PFASs) in the U.S. Some egg and plasma concentrations at that location exceeded the lowest reproductive effect threshold established for two avian laboratory species. The objectives of this study were to determine whether there were reproductive effects or physiological responses in a model bird species, the tree swallow (Tachycineta bicolor), associated with this extremely high exposure to PFASs. The lack of exposure above background to other contaminants at this site allowed for an assessment of PFAS effects without the complication that responses may be caused by other contaminants. A...
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This metadata record contains 6 tables used to assess sources of Polychlorinated Biphenyls (PCB) in the Back River watershed, Baltimore City, Maryland. Included in the dataset are PCB concentrations of surface water and porewater passive samplers from Herring Run, Moores Run, tidal Back River, and Back River Wastewater Treatment Plant; PCB concentrations of bed sediments and other solids, Fat, Oil, and Grease (FOG) samples, and road sediments; dissolved organic carbon (DOC), total suspended solids (TSS), and particulate organic carbon (POC) concentrations of grab samples; and PCB concentrations of passive samplers from pump stations collected in 2018-2020.
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Intracoelomic implantation of electronic tags has become a common method in fishery research, but rarely are fish examined by scientists after release to understand the extent that surgical incisions have healed. Walleye (Sander vitreus) are a valuable, highly-exploited fishery resource in the Laurentian Great Lakes. Here, fishery capture of walleye with internal acoustic transmitters combined with a high reward program provided multiple opportunities to examine photographs and quantify the status of surgical incisions. Walleye (n=926) from reef and river spawning populations in Lake Erie and Lake Huron were implanted with acoustic transmitters during spring spawning events from 2011 to 2016. Incisions were closed...
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Research and surveillance reports have documented a significant increase in coal workers' pneumoconiosis, including the most severe forms of progressive massive fibrosis and rapidly progressive pneumoconiosis in U.S. coal miners, particularly those in Appalachian coalfields. Several possible explanations for these observations include excessive exposures to total respirable dust, increased exposure to freshly fractured silica and silicates, or greater exposure to smaller particles that may be the result of changing mining practices. This dataset contains the chemical and morphological characteristics of particulate matter retrieved from lung tissue slices of historical and contemporary miners.
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This data release documents spatiotemporal water-quality, landscape, and climatic conditions in Fairfax County, Virginia from 2007 through 2018. These data were used to evaluate the water-quality and ecological condition of 20 Fairfax County watersheds monitored since 2007. Data include measures of water-quality, precipitation, air temperature, land use, land cover, wastewater and stormwater infrastructure, soil properties, geologic setting, and stream networks. Annual values from 2007 through 2018 are reported for data expected to change over time. Watershed-specific values are reported for data that differ across the landscape. Annual values for the 20 study watersheds and Fairfax County are reported in the file...
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This dataset includes gravity observations collected on the Coconino Plateau, Arizona, from 2015 to 2019 and reductions that were used to arrive at the gravity residual reported in the associated publication (Wildermuth, XXXX). Relative-gravity surveys were carried out using ZLS Burris relative-gravity meter. Absolute gravity values were taken from the closest NGS stations and relative-gravity differences were combined with nearby absolute gravity values using a least-squared network adjustment, as implemented in the software Gravnet (Hwang, C., Wang, C., Lee, L., 2002. Adjustment of relative gravity measurements using weighted and datum-free constraints. Comput. Geosci. 28, 1005–1015). Additional information about...
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Benthic diatom assemblages are known to be indicative of water quality but have yet to be widely adopted in biological assessments in the United States due to several limitations. Our goal was to address some of these limitations by developing regional multi-metric indices (MMIs) that are robust to inter-laboratory taxonomic inconsistency, adjusted for natural covariates, and sensitive to a wide range of anthropogenic stressors. We aggregated bioassessment data from two national-scale federal programs and used a data-driven analysis in which all-possible combinations of 2-7 metrics were compared for three measures of performance. The datasets in this release support the Carlisle, et al. 2022 report cited herein....
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A total of 27 temperature sensors were deployed along the lower 90 miles of the Yakima River at 7 locations where cold water had been previously observed. These 7 cold-water areas had 3 to 6 temperature sensors installed to document the extent and duration of these cold-water areas and their impacts on mainstem temperatures of the Lower Yakima River. Cold-water areas included the mouths of tributaries, alongside channels, and within alcoves. Sensor deployments ranged from 1 to 2 years beginning in October 2018. All temperature data are included in the Yakima.temperatures.zip folder. Details of each monitoring location are provided in the site.locs.csv file. In addition to the raw data and site location information,...
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In cooperation with the South Carolina Department of Transportation (SCDOT), the U.S. Geological Survey prepared geospatial layers illustrating the boundaries of the regions used in the South Carolina (SC) Stream Hydrograph Methods presented in Bohman (1990,1992). The region limits were described in written text and depicted in figures in Bohman (1990, 1992), but have not been provided as geospatial layers (due to the age of the original publications). This project used best-available geospatial data from the U.S. Environmental Protection Agency (USEPA) ecoregions (2013) to create equivalent geospatial representations of the Bohman (1990, 1992) region boundaries for the SC Stream Hydrograph Methods. These layers...
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This imagery dataset consists of 3-meter resolution, lidar-derived imagery of the Carlisle 30 x 60 minute quadrangle in Pennsylvania. The source data used to construct this imagery consists of 1-meter resolution lidar-derived digital elevation models (DEMs). The lidar source data were compiled from different acquisitions published between 2019 and 2020 and downloaded from the USGS National Map TNM Download. The data were processed using geographic information systems (GIS) software. The data is projected in WGS 1984 Web Mercator. This representation illustrates the terrain as a hillshade with contrast adjusted to highlight local relief according to a topographic position index (TPI) calculation.
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This data release contains results of model simulations of a plume at Kilauea volcano that occurred on 20 December 2020. The ash-poor plume was produced when lava flowed into a water lake at the summit of Kilauea volcano. Simulations were conducted to constrain the conditions under which the plume rose to its observed height. The analysis and results are described in the accompanying paper: Cahalan RC, Mastin L, Van Eaton A, Hurwitz S, Smith AB, Dufek J, Solovitz SA, Patrick M, Schmith J, Parcheta C, Thelen W, Downs DT (2023 (in press)) Dynamics of the December 2020 ash-poor plume formed by lava-water interaction at the summit of Kīlauea Volcano, Hawaiʻi. Geochemistry, Geophysics, Geosystems.
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This data release contains one dataset and one model archive in support of the journal article, "Leveraging machine learning to automate regression model evaluations for large multi-site water-quality trend studies," by Jennifer C. Murphy and Jeffrey G. Chanat. The model archive contains scripts (run in R) to reproduce the four machine learning models (logistic regression, linear and quadratic discriminant analysis, and k-nearest neighbors) trained and tested as part of the journal article. The dataset contains the estimated probabilities for each of these models when applied to a training and test dataset.