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Interest in the field of environmental DNA (eDNA) is growing rapidly and eDNA surveys are becoming an important consideration for aquatic resource managers dealing with invasive species. However, in order for eDNA monitoring to mature as a research and management tool, there are several critical knowledge gaps that must be filled. One such gap is the fate of eDNA materials in the aquatic environment. Understanding the environmental factors that influence the decay of eDNA and how these factors impact detection probabilities over time and space could have significant implications for eDNA survey design and data interpretation. Here we experimentally explore eDNA decay in waste materials and reproductive cells obtained...
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This dataset provides supporting information for the species distribution data used in the associated manuscript. Collections of five non-native fish species were made by a number of institutions, and several capture techniques were used. This dataset also includes number of individuals of each species captured at each locality.
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This collection of GIS layers was prepared for the report Alaska Arctic Marine Fish Ecology Catalog (U.S. Geological Survey Scientific Investigations Report 2016–5038). The layers display geographic distribution and sampling locations for Arctic marine fish species in the region of United States sectors of the Chukchi and Beaufort Seas. Certain diadromous species (for example, Pacific salmon, char, and whitefishes) are treated as marine fishes (McDowall, 1987) because much of their life cycle is in marine and brackish environments. This synthesis of information is meant to provide current information and understanding of this fauna and its relative vulnerability to changing Arctic conditions. There are 104 species...
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Physical and chemical changes affect the biota within urban streams at varying scales ranging from individual organisms to populations and communities creating complex interactions that present challenges for characterizing and monitoring the impact on species utilizing these freshwater habitats. Salmonids, specifically cutthroat trout (Oncorhynchus clarkii) and coho salmon (Oncorhynchus kisutch), extensively utilize small stream habitats influenced by a changing urban landscape. This study used a comprehensive fish health assessment concurrent with the U.S. Geological Survey’s Pacific Northwest Stream Quality Assessment in 2015 to quantifiy impacts from disease in juvenile coho and cutthroat salmon, impacts to...
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Data are time series of substrate grain size, remotely sensed water column turbidity, and measures of abundance (e.g., density, percent cover) of the nearshore subtidal (3-17 m depth) benthic community (vegetation, invertebrates, and fish) collected before (2008-2011) and during dam removal (2012-2014).
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This data release contains environmental and quality control results for chemical, biological, and physical sampling of water and bed sediment from Albemarle Sound and associated tributaries between 2012 and 2014 referenced in USGS OFR 2016-1171. Appendix 1 contains all quality control results to characterize the bias and variability of sampling, handling, and analysis of water, phytoplankton, and bed sediment samples. Appendix 2 contains all the chemical, biological, and physical results for water samples collected in July and August of 2012. Appendix 3 contains all the chemical, biological, and physical results for water samples collected from March 2013 to February 2014. Data are included for discrete samples...
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The Fisheries and Wildlife Resources Group combines the expertise of professional fisheries scientists, wildlife biologists, environmental regulatory specialists, and environmental chemists, to conduct a wide variety of multidisciplinary environmental field and laboratory studies concerning aquatic and terrestrial habitats, wildlife, water quality, and environmental impacts.
The U.S. Geological Survey maintains a program of water-quality studies in San Francisco Bay (CA) that began in 1969. This U.S.G.S. Data Release is a continuation of the previously published 1969-2015 dataset (Cloern and Schraga, 2016; Schraga and Cloern, 2017), it will archive and make available all measurements from 2016 and thereafter. Each year, a data file containing the previous year’s data will be added. Water-quality constituent measurements include salinity, temperature, light attenuation coefficient, and concentrations of chlorophyll-a, dissolved oxygen, suspended particulate matter, and dissolved inorganic nutrients (nitrate, nitrite, ammonium, phosphate and silicate). The sampling is conducted at least...
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Hydrologic connectivity can be an important driver of aquatic macroinvertebrate assemblages. Its effects on aquatic macroinvertebrate assemblages in coastal marshes, however, are relatively poorly studied. We evaluated the effects of lateral hydrologic connectivity (permanently connected ponds: PCPs; temporary connected ponds: TCPs), and other environmental variables on aquatic macroinvertebrate assemblages and functional feeding groups (FFGs) in freshwater, brackish, and saline marshes in Louisiana, USA. We hypothesized that (1) aquatic macroinvertebrate assemblages in PCPs would have higher assemblage metric values (density, biomass, Shannon-Wiener diversity) than TCPs and (2) the density and proportional abundance...
Categories: Publication; Types: Citation; Tags: Aquatic Biology
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Bull trout (Salvelinus confluentus), listed as threatened under the Endangered Species Act, are among the more thermally sensitive of coldwater species in North America. The Boise River upstream of Arrowrock Dam in southwestern Idaho (including Arrowrock Reservoir) provides habitat for one of the southernmost populations of bull trout. The presence of the species in Arrowrock Reservoir poses implications for dam and reservoir operations. From 2011 to 2014, the Bureau of Reclamation and the U.S. Geological Survey collected fish telemetry data to improve understanding of bull trout distribution and movement in Arrowrock Reservoir and in the upper Boise River tributaries. The U.S. Geological Survey compiled the telemetry...
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This map was created to help assess impacts on nonindigenous aquatic species distributions due to flooding associated with Hurricane Maria. Storm surge and flood events can assist expansion and distribution of nonindigenous aquatic species through the connection of adjacent watersheds, backflow of water upstream of impoundments, increased downstream flow, and creation of freshwater bridges along coastal regions. This map will help natural resource managers determine potential new locations for individual species, or to develop a watch list of potential new species within a watershed. These data include a subset of data from the Nonindigenous Aquatic Species Database, that fall within the general area of the 2017...
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We developed and validated conventional and quantitative real-time PCR assays for the detection of DNA from the myxozoan parasite Tetracapsuloides bryosalmonae, the causative agent of proliferative kidney disease in fish. Assays were tested on fish tissue and on field-collected water samples to assess diagnostic and environmental DNA capabilities. The specificity, sensitivity, and broad applicability of the present assays surpass previous methods for detecting T. bryosalmonae DNA from fish tissue and water samples.
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The data set includes the macroinvertebrate metrics calculated by IDAS software (Cuffney 2003, USGS OFR 03-172) for the Midwest Stream Quality Assessment (MSQA). Invert data is taxonomic data that has been summarized into variables called metrics that summarize various components of the taxonomic data. The original taxonomic data comes from USGS BioData.
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Ecological assessment data from the USGS National Water-Quality Assessment Program and the USEPA National River and Stream Assessment were reviewed and records were retained from sampling sites co-located with active USGS stream gages. A limited amount of ancillary data, including location, physical watershed features, and basic water chemistry data for each site were also retained.
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These data represent the standard curve values as well as measurements of cytokine and reference gene transcripts from blood samples collected from Florida manatees and quantified using quantitative PCR.
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We measured the response of plants to disturbance across a gradient in inundation times by transplanting tussocks of Schoenoplectus americanus into mesocosms of different elevation in two marsh organ platforms. Both organs were planted on April 11, 2012 and harvested on August 21, 2012. Plants in one organ were disturbed by clipping all above ground vegetation on June 20 2012 (62 days), and left undisturbed in a control organ. Plant stems were clipped at the soil surface to isolate standing above ground material, and sorted into live and dead fractions by species. Above ground biomass was washed and dried at 70°C to a constant weight.
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Loricariid catfish of the genus Pterygoplichthys have been introduced in many localities around the world. They are freshwater fishes, but may also use low-salinity habitats such as estuaries for feeding or dispersal. Here we report results of a field survey and salinity-tolerance trials for a population of Pterygoplichthys sp. collected in Kerala, India. In both chronic and acute salinity-tolerance trials, fish were able to withstand salinities up to 12 ppt with no mortality; however, fish transferred to salinities > 12 ppt did not survive. The experimental results provide evidence that non-native Pterygoplichthys sp. are able to tolerate mesohaline conditions for extended periods, and can easily invade the brackish...
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This map was created to help assess impacts on nonindigenous aquatic species distributions due to flooding associated with Hurricane Irma. Storm surge and flood events can assist expansion and distribution of nonindigenous aquatic species through the connection of adjacent watersheds, backflow of water upstream of impoundments, increased downstream flow, and creation of freshwater bridges along coastal regions. This map will help natural resource managers determine potential new locations for individual species, or to develop a watch list of potential new species within a watershed. These data include a subset of data from the Nonindigenous Aquatic Species Database, that fall within the general area of the 2017...


map background search result map search result map Test Harvest Geodatabase Containing Bull Trout (Salvelinus confluentus) Information from the Upper Boise River, Southwestern Idaho Associated data for Water Quality and Sediment Quality in the Albemarle Sound, North Carolina, 2012–14 Associated data for Water Quality and Sediment Quality in the Albemarle Sound, North Carolina, 2012–14, Appendix 3 Experimental Observations on the decay of Environmental DNA from Bighead and Silver Carp-Data Experimental recovery rates of tidal marsh vegetation Dataset for Alaska Marine Fish Ecology Catalog Multi-stressor Predictive Models of Invertebrate Condition in the Corn Belt, U.S.A. Distribution and status of five non-native fish species in the Tampa Bay drainage (USA), a hot spot for fish introductions-Data Conventional and quantitative PCR assays for detecting Tetracapsuloides bryosalmonae in fish tissue and environmental DNA water samples Matched ecological assessment and stream gaging data for the CONUS Nonindigenous aquatic species and potential spread after Hurricane Maria Nonindigenous aquatic species and potential spread after Hurricane Irma Evaluating Coho Salmon in Streams Across an Urbanization Gradient—Part 1, Growth Potential Based on Environmental Factors and Bioenergetics Quantitative PCR standard curve and transcript values for the Florida manatee (Trichechus manatus latirostris), derived from 2013-14 manatee health assessments in Crystal River and Titusville, Florida Data collected in 2008-2014 to assess nearshore subtidal community responses to increased sediment load during removal of the Elwha River dams, Washington State, USA Experimental recovery rates of tidal marsh vegetation Distribution and status of five non-native fish species in the Tampa Bay drainage (USA), a hot spot for fish introductions-Data Quantitative PCR standard curve and transcript values for the Florida manatee (Trichechus manatus latirostris), derived from 2013-14 manatee health assessments in Crystal River and Titusville, Florida Geodatabase Containing Bull Trout (Salvelinus confluentus) Information from the Upper Boise River, Southwestern Idaho Associated data for Water Quality and Sediment Quality in the Albemarle Sound, North Carolina, 2012–14 Associated data for Water Quality and Sediment Quality in the Albemarle Sound, North Carolina, 2012–14, Appendix 3 Nonindigenous aquatic species and potential spread after Hurricane Maria Evaluating Coho Salmon in Streams Across an Urbanization Gradient—Part 1, Growth Potential Based on Environmental Factors and Bioenergetics Test Harvest Nonindigenous aquatic species and potential spread after Hurricane Irma Multi-stressor Predictive Models of Invertebrate Condition in the Corn Belt, U.S.A. Conventional and quantitative PCR assays for detecting Tetracapsuloides bryosalmonae in fish tissue and environmental DNA water samples Dataset for Alaska Marine Fish Ecology Catalog Matched ecological assessment and stream gaging data for the CONUS