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Associated data for Water Quality and Sediment Quality in the Albemarle Sound, North Carolina, 2012–14, Appendix 3
These are all the chemical, biological, and physical results collected in 2013 and 2014 for the subject study.
Evaluating Coho Salmon in Streams Across an Urbanization Gradient—Part 1, Growth Potential Based on Environmental Factors and Bioenergetics
Physical and chemical changes affect the biota within urban streams at varying scales ranging from individual organisms to populations and communities creating complex interactions that present challenges for characterizing and monitoring the impact on species utilizing these freshwater habitats. Salmonids, specifically cutthroat trout (Oncorhynchus clarkii) and coho salmon (Oncorhynchus kisutch), extensively utilize small stream habitats influenced by a changing urban landscape. This study used a comprehensive fish health assessment concurrent with the U.S. Geological Survey’s Pacific Northwest Stream Quality Assessment in 2015 to quantifiy impacts from disease in juvenile coho and cutthroat salmon, impacts to...
Data collected in 2008-2014 to assess nearshore subtidal community responses to increased sediment load during removal of the Elwha River dams, Washington State, USA
Data are time series of substrate grain size, remotely sensed water column turbidity, and measures of abundance (e.g., density, percent cover) of the nearshore subtidal (3-17 m depth) benthic community (vegetation, invertebrates, and fish) collected before (2008-2011) and during dam removal (2012-2014).
The Fisheries and Wildlife Resources Group combines the expertise of professional fisheries scientists, wildlife biologists, environmental regulatory specialists, and environmental chemists, to conduct a wide variety of multidisciplinary environmental field and laboratory studies concerning aquatic and terrestrial habitats, wildlife, water quality, and environmental impacts.
The U.S. Geological Survey maintains a program of water-quality studies in San Francisco Bay (CA) that began in 1969. This U.S.G.S. Data Release is a continuation of the previously published 1969-2015 dataset (Cloern and Schraga, 2016; Schraga and Cloern, 2017), it will archive and make available all measurements from 2016 and thereafter. Each year, a data file containing the previous year’s data will be added. Water-quality constituent measurements include salinity, temperature, light attenuation coefficient, and concentrations of chlorophyll-a, dissolved oxygen, suspended particulate matter, and dissolved inorganic nutrients (nitrate, nitrite, ammonium, phosphate and silicate). The sampling is conducted at least...
This collection of GIS layers was prepared for the report Alaska Arctic Marine Fish Ecology Catalog (U.S. Geological Survey Scientific Investigations Report 2016–5038). The layers display geographic distribution and sampling locations for Arctic marine fish species in the region of United States sectors of the Chukchi and Beaufort Seas. Certain diadromous species (for example, Pacific salmon, char, and whitefishes) are treated as marine fishes (McDowall, 1987) because much of their life cycle is in marine and brackish environments. This synthesis of information is meant to provide current information and understanding of this fauna and its relative vulnerability to changing Arctic conditions. There are 104 species...
Associated data for Water Quality and Sediment Quality in the Albemarle Sound, North Carolina, 2012–14
This data release contains environmental and quality control results for chemical, biological, and physical sampling of water and bed sediment from Albemarle Sound and associated tributaries between 2012 and 2014 referenced in USGS OFR 2016-1171. Appendix 1 contains all quality control results to characterize the bias and variability of sampling, handling, and analysis of water, phytoplankton, and bed sediment samples. Appendix 2 contains all the chemical, biological, and physical results for water samples collected in July and August of 2012. Appendix 3 contains all the chemical, biological, and physical results for water samples collected from March 2013 to February 2014. Data are included for discrete samples...
Distribution and status of five non-native fish species in the Tampa Bay drainage (USA), a hot spot for fish introductions-Data
This dataset provides supporting information for the species distribution data used in the associated manuscript. Collections of five non-native fish species were made by a number of institutions, and several capture techniques were used. This dataset also includes number of individuals of each species captured at each locality.
OBIS-USA brings together marine biological occurrence data – recorded observations of identifiable marine species at a known time and place, collected primarily from U.S. Waters or with U.S. funding. Coordinated by the Core Science, Analytics, Synthesis, and Libraries (CSAS&L) Program of the United States Geological Survey (USGS), OBIS-USA, strives to meet national data integration and dissemination needs for marine data about organisms and ecosystems. OBIS-USA is part of an international data sharing network (Ocean Biogeographic Information System, OBIS) coordinated by the Intergovernmental Oceanographic Commission, of UNESCO (United Nations Educational, Science and Cultural Organization International Oceanographic...
Macroinvertebrate and water quality data from the Prairie Pothole Region of the Williston Basin (2014-2016)
These datasets contain aquatic macroinvertebrate and water quality data collected from 159 wetlands in Montana and North Dakota within the Prairie Pothole Region of the Williston Basin.
Interest in the field of environmental DNA (eDNA) is growing rapidly and eDNA surveys are becoming an important consideration for aquatic resource managers dealing with invasive species. However, in order for eDNA monitoring to mature as a research and management tool, there are several critical knowledge gaps that must be filled. One such gap is the fate of eDNA materials in the aquatic environment. Understanding the environmental factors that influence the decay of eDNA and how these factors impact detection probabilities over time and space could have significant implications for eDNA survey design and data interpretation. Here we experimentally explore eDNA decay in waste materials and reproductive cells obtained...
Salinity tolerance among three freshwater mussels (Bivalvia: Unionidae) from Gulf Coastal Plain drainages
An important physiological constraint influencing distributions of coastal freshwater organisms is their tolerance for saline conditions. We experimentally evaluated salinity tolerance for three freshwater mussel species (Utterbackia imbecillis, Elliptio jayensis, and Glebula rotundata). Mussels were transferred abruptly from well water to one of five treatments (0 [control], 6, 12, 18 or 24 parts per thousand [ppt]) with no acclimation. Utterbackia imbecillis survived on average about 2 days at treatments ≥ 6 ppt, while Elliptio jayensis survived slightly longer (about 4 days). Glebula rotundata was most tolerant to salinity, surviving as well at 6 and 12 ppt as it did in the control. Additionally, G. rotundata...
Effects of hydrologic connectivity on aquatic macroinvertebrate assemblages in different marsh types
Hydrologic connectivity can be an important driver of aquatic macroinvertebrate assemblages. Its effects on aquatic macroinvertebrate assemblages in coastal marshes, however, are relatively poorly studied. We evaluated the effects of lateral hydrologic connectivity (permanently connected ponds: PCPs; temporary connected ponds: TCPs), and other environmental variables on aquatic macroinvertebrate assemblages and functional feeding groups (FFGs) in freshwater, brackish, and saline marshes in Louisiana, USA. We hypothesized that (1) aquatic macroinvertebrate assemblages in PCPs would have higher assemblage metric values (density, biomass, Shannon-Wiener diversity) than TCPs and (2) the density and proportional abundance...
Conventional and quantitative PCR assays for detecting Tetracapsuloides bryosalmonae in fish tissue and environmental DNA water samples
We developed and validated conventional and quantitative real-time PCR assays for the detection of DNA from the myxozoan parasite Tetracapsuloides bryosalmonae, the causative agent of proliferative kidney disease in fish. Assays were tested on fish tissue and on field-collected water samples to assess diagnostic and environmental DNA capabilities. The specificity, sensitivity, and broad applicability of the present assays surpass previous methods for detecting T. bryosalmonae DNA from fish tissue and water samples.
Ecological assessment data from the USGS National Water-Quality Assessment Program and the USEPA National River and Stream Assessment were reviewed and records were retained from sampling sites co-located with active USGS stream gages. A limited amount of ancillary data, including location, physical watershed features, and basic water chemistry data for each site were also retained.
We measured the response of plants to disturbance across a gradient in inundation times by transplanting tussocks of Schoenoplectus americanus into mesocosms of different elevation in two marsh organ platforms. Both organs were planted on April 11, 2012 and harvested on August 21, 2012. Plants in one organ were disturbed by clipping all above ground vegetation on June 20 2012 (62 days), and left undisturbed in a control organ. Plant stems were clipped at the soil surface to isolate standing above ground material, and sorted into live and dead fractions by species. Above ground biomass was washed and dried at 70°C to a constant weight.
The data set includes the macroinvertebrate metrics calculated by IDAS software (Cuffney 2003, USGS OFR 03-172) for the Midwest Stream Quality Assessment (MSQA). Invert data is taxonomic data that has been summarized into variables called metrics that summarize various components of the taxonomic data. The original taxonomic data comes from USGS BioData.
Population dynamics of humpback chub, rainbow trout and brown trout in the Colorado River in its Grand Canyon Reach: modelling code and input data
These data were compiled to fit an integrated population model of brown trout in the Glen Canyon Reach of the Colorado River and test different hypotheses regarding the driver of brown trout population dynamics. Also, data were compiled as inputs for a model to simulate population dynamics and species interactions among brown trout, rainbow trout and humpback chub in the Colorado River between Glen Canyon Dam and the confluence of the Colorado River and the Little Colorado River.
Quantitative PCR standard curve and transcript values for the Florida manatee (Trichechus manatus latirostris), derived from 2013-14 manatee health assessments in Crystal River and Titusville, Florida
These data represent the standard curve values as well as measurements of cytokine and reference gene transcripts from blood samples collected from Florida manatees and quantified using quantitative PCR.