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The “Biophysical assessment for indemnity selection of federal lands in Colorado: Indemnity Unit locations” dataset delineates the spatial locations of 89 Indemnity Units, comprising 339 parcels of federal lands. These lands, currently managed by the Bureau of Land Management (BLM), are under consideration for transfer of ownership to the State of Colorado in compensation for federal lands not available for transfer at the time of statehood. The Indemnity Units total 23,130 acres of surface and mineral estate and 6,150 acres of mineral estate only. The specific land parcels to be transferred to the State will be finalized after an environmental analysis is completed, as required by the National Environmental Policy...
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Data were collected in 2017 by researchers at the USGS, USDA-ARS, and University of Wyoming on the food webs of plants, prairie dogs, arthropods, and birds in the Thunder Basin National Grassland. Data were collected from 87 sites in order to parameterize a structural equation model linking prairie dog impacts to changes in vegetation, arthropods, and birds. Abiotic information such as topographic wetness index, terrain roughness, and soil characteristics were estimated at the same set of plots in order to account for abiotic variation across the landscape.
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We developed a hierarchical clustering approach that identifies biologically relevant landscape units that can 1) be used as a long-term population monitoring framework, 2) be repeated across the Greater sage-grouse range, 3) be used to track the outcomes of local and regional populations by comparing population changes across scales, and 4) be used to inform where to best spatially target studies that identify the processes and mechanisms causing population trends to change among spatial scales. The spatial variability in the amount and quality of habitat resources can affect local population success and result in different population growth rates among smaller clusters. Equally so, the spatial structure and ecological...
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This dataset includes ovary mass and stable hydrogen isotope compositions of feathers and claws from resident and migratory female dark-eyed juncos (Junco hyemalis) collected during early spring at Mountain Lake Biological Station, Pembroke, Virginia. A total of 18 migrant and 15 resident female dark-eyed juncos, a songbird that exhibits seasonal sympatry, were caught during March-April. Stable hydrogen isotopes were used to infer relative breeding and wintering latitude of migrants. Ovary mass served as a proxy for reproductive development. These data were used to explore whether seasonal sympatry fosters or inhibits genetic divergence between migrants and residents and to the extent that this depends on their...
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The dataset is comprised of historical observations and predictions of winter colony counts at known sites for three bat species (little brown bat, Myotis lucifugus; tricolored bat, Perimyotis subflavus; and big brown bat, Eptesicus fuscus). The dataset consists of two separate but related data files in tabular format (comma-separated values [.csv]). Each data set consists of predicted winter counts derived using winter status and trends modeling methods developed by the North American Bat Monitoring Program (NABat). These two predicted winter count data sets were used to inform NABat summertime status and trends analysis: 1) modeled abundance predictions for all hibernacula for all three species from 2010-2021,...
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On an island largely devoid of native vertebrate seed dispersers, we monitored forest succession for seven years following ungulate exclusion from a 5-hectare area and adjacent plots with ungulates still present. The study site was in northern Guam on Andersen Air Force Base (13°37’N, 144°51’E) and situated on a coralline limestone plateau. We established 22 plots and six 0.25-m2 subplots to measure trees and understory canopy. Data were collected in February or March, during the dry season from 2005-2011.
The “Biophysical assessment for indemnity selection of federal lands in Colorado: Soil salinity using electrical conductance” dataset includes information on soil salinity for 89 Indemnity Units, comprising 339 parcels of federal lands. These lands, currently managed by the Bureau of Land Management (BLM), are under consideration for transfer of ownership to the State of Colorado in compensation for federal lands not available for transfer at the time of statehood. The Indemnity Units total 23,130 acres of surface and mineral estate and 6,150 acres of mineral estate only. The specific land parcels to be transferred to the State will be finalized after an environmental analysis is completed, as required by the National...
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This contains data from 1,030 surveys returned in 2017 from across the United States. Data were collected via a mail-out survey stratified by the population of each state. Data collected include nature-related activity participation, attitudes and barriers to hunting and birdwatching, knowledge of others who hunt and birdwatch, preferred birds, involvement in conservation activities, preferences for information channels on nature-related topics, trust in sources on nature-related topics, wetlands knowledge/visitation, evaluation of wetlands' ecosystem services, and demographics. The purpose of this survey was to inform the 2018 update of the North American Waterfowl Management Plan.
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Genetic networks can characterize complex genetic relationships among groups of individuals, which can be used to rank nodes most important to the overall connectivity of the system. Ranking allows scarce resources to be guided towards nodes integral to connectivity. The greater sage-grouse (Centrocercus urophasianus) is a species of conservation concern that breeds on spatially discrete leks that must remain connected by genetic exchange for population persistence. We genotyped 5,950 individuals, from 1,200 greater sage-grouse leks distributed across the entire species’ geographic range. We found a small world network composed of 458 nodes connected by 14,481 edges that are described here. The files associated...
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We studied black-tailed prairie dogs (Cynomys ludovicianus) on the Conata Basin, Buffalo Gap National Grassland, South Dakota, USA, 2007-2009. We live-trapped and sampled prairie dogs in 2007 (before known invasion of the plague bacterium Yersinia pestis), 2008 (the year of confirmed invasion), and 2009 (after invasion). Sampling was completed on three 9-ha plots treated annually with deltamethrin dust for flea (Y. pestis-vector) control and three 9-ha plots lacking flea control (non-dusted) as baselines. Each live-trapped prairie dog was marked with ear tags for permanent identification and tracking of survival. If a marked prairie dog was recaptured and identified (via ear tags) the following year, the prairie...
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These data contain the results from the North American Bat Monitoring Program's (NABat) species distribution model (SDM) for the northern long-eared bat (Myotis septentrionalis). The provided tabular data includes predictions (with upper and lower confidence intervals) for northern long-eared bat occupancy probabilities (which represent the probability of presence) based on data from the entire summer season (May 1-August 31), averaged from 2017-2022, in each NABat grid cell (5km x 5km scale) across the range of the species. Specifically, predictions represent occupancy probabilities in the pre-volancy season in the summer (May 1–July 15), i.e., the period of time before juveniles can fly and become detectable by...
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This dataset contains two predictive lek (breeding site) persistence raster layers covering the U.S. greater sage-grouse distribution. In the United States, locations where males display and breed with females (i.e., leks) are often monitored annually by state wildlife agencies, providing valuable information on the persistence of birds in the surrounding areas. A U.S. range-wide lek database was recently compiled for greater sage-Grouse (O’Donnell et al. 2021), providing a standardized source of information to build statistical models to evaluate environmental characteristics associated with lek persistence. The compiled lek database classified a subset of leks as being either active (leks currently used for breeding...
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These data contain the results from the North American Bat Monitoring Program's (NABat) integrated species distribution model (iSDM) for tricolored bats (Perimyotis subflavus). The provided tabular data include predictions (with uncertainty) for tricolored bat occupancy probabilities (i.e., probability of presence) based on data from the entire summer season (May 1–Aug 31), averaged from 2017-2022, in each NABat grid cell (5km x 5km scale) across the range of the species. Specifically, predictions represent occupancy probabilities in the pre-volancy season in the summer (May 1 – July 15), i.e., the period of time before juveniles can fly and become detectable. Predictions were produced using an analytical pipeline...
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Lake Sinai Viruses (LSV) are common ribonucleic acid (RNA) viruses of honey bees (Apis mellifera) that frequently reach high abundance but are not linked to overt disease. LSVs are genetically heterogeneous and collectively widespread, but despite frequent detection in surveys, the ecological and geographic factors structuring their distribution in A. mellifera are not understood. Even less is known about their distribution in other species. Better understanding of LSV prevalence and ecology have been hampered by high sequence diversity within the LSV clade. We developed a new genetic assay that detects all currently known lineages. We also performed pilot metagenetic sequencing to quantify the diversity of LSV...
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We created a probabilistic classification model using the nonparametric machine learning technique 'Random Forests' for oil and gas development potential from low (0) to high (1) across the western US. The six predictor variables used in the model were: geophysical data showing aeromagnetic, isostatic gravity, and Bouguer gravity anomalies, geology, topography and bedrock depth. Our binary response variable was geospatial point data on producing and non-producing oil and gas wells. Our estimates provide insights into the trajectory and eventual endpoint of oil and gas development, but the rate and exact location of development will be subject to additional factors not considered such as market demand, the capacity...
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Data on factors that affect the grooming behaviors of black-tailed prairie dogs in Phillips County, Montana, 2006. Each line of data presents information for a focal observation of a single black-tailed prairie dog. The data includes information on the date of each observation, the approximate coordinates of sites, the time of each observation, indexed wind speed, indexed temperature, the presence or absence of deltamethrin dust (pulicide) treatment, the amount of time a human spent observing the prairie dog, the proportion of time spent scratching by the prairie dog, the proportion of time spent oral autogrooming by the prairie dog, the proportion of time spent allogrooming by the prairie dog, and the overall proportion...
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To identify potential biomarkers of salt stress in the freshwater mussel Elliptio complanata, we examined transcriptional responses of the common mussel Elliptio complanata to controlled NaCl exposures. The data set is a table of counts, with the rows being the transcripts detected in the samples in the experiment and the columns identifying the samples. Four mussles were exposed to normal freshwater and four mussels were exposed to high salinity (two ppt), for a period of seven days.
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The dataset consists of genotypes (diploid base calls at variant sites) at 3,601 anonymous sites of the Arizona Toad (Anaxyrus microscaphus) nuclear genome. The genotyped samples are representative of the range of the species and its major population units, and the genotyped loci have a high degree of completeness. This data release consists of several files: 1. sample.metadata.txt, which contains sampling metadata and identifiers linking to sequence data that has been deposited in the Sequence Read Archive of the National Center for Biotechnology Information (NCBI). This database is authoritative and comprehensive for sharing high-throughput sequence data produced with public funds. All NCBI-derived accessions...
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This data set includes riparian woody stem counts, stem densities and landscape variables collected at 28 sites along the South Platte River, Colorado, United States from 2011-2016. Riparian woody stem densities were collected in the field during 2011, 2015, and 2016, and include the species Ulmus pumila, Populus deltoides, Salix amygdaloides, Fraxinus pennsylvanica, and Elaeagnus angustifolia. For Ulmus pumila, data are included for total stem density and stem densities of three size classes: saplings, medium, and large trees. Landscape variables at each site include: farmstead density, population density, upland Ulmus pumila density, bridge density, road density, active river channel, floodplain area, upstream...
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Honey bees (Apis mellifera), a critical agricultural pollinator in many areas, have a high rate of infection with a large DNA virus, Apis mellifera filamentous virus (AmFV), yet little is known about its ecology or impact on honey bee colonies, other than its ubiquity and apparent low virulence. This study scanned over 5,000 public data sets to detect AmFV sequences in honey bees as well as a parasitic mite of honey bees, Varroa destructor, that is a potential vector of AmFV. The data release consists of these files: 1. AmFV.genome.assemblies.aligned.fas, which contains new AmFV draft genome sequences generated by this study aligned with existing reference genome accessions downloaded from the National Center for...
map background search result map search result map Dataset: Forest growth in and around an ungulate enclosure on Northern Guam, 2005-2011 Results of a U.S. General Public Survey to Inform the 2018 North American Waterfowl Management Plan Update (2017) Grooming behaviors of black-tailed prairie dogs in Phillips County, Montana, 2006 Biophysical assessment for indemnity selection of federal lands in Colorado: Indemnity Unit locations Genetic data and genetic network attributes for rangewide Greater Sage-grouse network constructed in 2018 (ver. 2.0, December 2022) Hierarchically nested and biologically relevant monitoring frameworks for Greater Sage-grouse, 2019, Nevada and Wyoming, Interim Ovary mass and stable hydrogen isotope data for resident and migratory female dark-eyed juncos Data on prairie dogs, plants, arthropod biomass, and birds for Thunder Basin, Wyoming in 2017 Genetic detection of Lake Sinai Virus in honey bees (Apis mellifera) and other insects Oil and gas development potential in the US Intermountain West Riparian woody stem densities and landscape variables along the South Platte River, Colorado, United States, 2011-2016 U.S. range-wide spatial prediction layers of lek persistence probabilities for greater sage-grouse Data on the effects of F1-V plague antigen vaccination and deltamethrin dust on black-tailed prairie dog annual survival and flea parasitism, South Dakota, 2007-2009 North American Bat Monitoring Program (NABat) Integrated Summer Species Distribution Model: Predicted Tricolored Bat Occupancy Probabilities North American Bat Monitoring Program (NABat) Bayesian Hierarchical Model for Winter Abundance: Predicted Population Estimates (2022 and 2023) Reduced representation sequencing and genotyping of Arizona Toads (Anaxyrus microscaphus) from the southwestern United States North American Bat Monitoring Program (NABat) Predicted Northern Long-Eared Bat Occupancy Probabilities Dataset: Forest growth in and around an ungulate enclosure on Northern Guam, 2005-2011 Grooming behaviors of black-tailed prairie dogs in Phillips County, Montana, 2006 Ovary mass and stable hydrogen isotope data for resident and migratory female dark-eyed juncos Data on prairie dogs, plants, arthropod biomass, and birds for Thunder Basin, Wyoming in 2017 Riparian woody stem densities and landscape variables along the South Platte River, Colorado, United States, 2011-2016 Biophysical assessment for indemnity selection of federal lands in Colorado: Indemnity Unit locations Reduced representation sequencing and genotyping of Arizona Toads (Anaxyrus microscaphus) from the southwestern United States Hierarchically nested and biologically relevant monitoring frameworks for Greater Sage-grouse, 2019, Nevada and Wyoming, Interim Genetic data and genetic network attributes for rangewide Greater Sage-grouse network constructed in 2018 (ver. 2.0, December 2022) U.S. range-wide spatial prediction layers of lek persistence probabilities for greater sage-grouse Oil and gas development potential in the US Intermountain West Genetic detection of Lake Sinai Virus in honey bees (Apis mellifera) and other insects Results of a U.S. General Public Survey to Inform the 2018 North American Waterfowl Management Plan Update (2017) North American Bat Monitoring Program (NABat) Integrated Summer Species Distribution Model: Predicted Tricolored Bat Occupancy Probabilities North American Bat Monitoring Program (NABat) Predicted Northern Long-Eared Bat Occupancy Probabilities North American Bat Monitoring Program (NABat) Bayesian Hierarchical Model for Winter Abundance: Predicted Population Estimates (2022 and 2023)