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These data were compiled to create models that estimate entrainment rates and population growth rates of smallmouth bass below Glen Canyon Dam. Objective(s) of our study were to predict smallmouth bass entrainment rates and population growth under different future scenarios of Lake Powell elevations and management. These data represent parameters needed for associated models and data needed to produce figures. These data were collected from publicly available online sources including published papers and federal government datasets. These data were assembled by researchers from U.S. Geological Survey, Utah State University, Colorado State University, U.S. Fish and Wildlife Service. These data can be used to run...
This work is part of an experimental trial to develop and assess novel recombinant raccoonpox virus (RCN) rabies vaccines in the mouse model, for potential use in bats. Briefly, our research group previously developed a recombinant RCN vaccine candidate expressing a mosaic glycoprotein (MoG) gene that protected mice and big brown bats when challenged with rabies virus (RABV). We developed two new recombinant RCN candidates expressing MoG (RCN-tPA-MoG and RCN-SS-TD-MoG) with the aim of improving RCN-MoG. We assessed and compared in vitro expression, in vivo immunogenicity, and protective efficacy in vaccinated mice challenged intracerebrally with RABV. In this data set, we share results of immunofluorescence assay...
This dataset records mortality-- including involvement of bark beetles-- and burn severity information for trees in long term forest dynamics plots in Sequoia National Park and Yosemite National Park that experienced fire. These data support the following publication: Furniss, T.J., Das, A.J., van Mantgem, P.J., Stephenson, N.L. and Lutz, J.A., 2021. Crowding, climate, and the case for social distancing among trees. Ecological Applications, p.e2507, https://doi.org/10.1002/eap.2507
Categories: Data;
Tags: California,
Forestry,
Sequoia National Park,
Sierra Nevada,
USGS Science Data Catalog (SDC),
This dataset includes hourly stream temperature data for 139 temperature logger sites throughout the Lahontan Basin Region of Northern Nevada and Eastern California. Data loggers were part a study beginning in 2017, with data available through 2019 for most locations. The spatial data layer contains site locations, geographic information, data summaries, mean August stream temperatures, and modeled NorWeST stream temperatures. The Wet-Dry delineation file contains daily flow status estimates derived from stream temperature data for each site. The Site Visit file contains the date and time of the site visit along with associated information on site flow conditions, water depths, logger conditions, and stream logger...
Categories: Data;
Types: Downloadable,
Map Service,
OGC WFS Layer,
OGC WMS Layer,
Shapefile;
Tags: Aquatic Biology,
California,
Ecology,
Hydrology,
Intermittent,
San Francisco Bay, California is considered a mercury-impaired watershed. Elevated concentrations of mercury are found in water and sediment as well as fish and estuarine birds. Sources of mercury to the watershed since 1845 include sediment-associated mercury from mercury mining, mercury losses from gold amalgamation activities in mines of the Sierra Nevada, aerial deposition of mercury from global and regional emissions to air, and the direct discharge of mercury to Bay waters associated with the urbanization and industrialization of the estuary. We assessed historical trends in mercury bioaccumulation by measuring mercury concentrations in feathers of the endangered California Ridgway’s rail (formerly California...
This dataset includes microsatellite genotypes for 44 collections of Habroscelimorpha dorsalis dorsalis and 14 collections of H. d. media distributed from Massachusetts to Florida, United States.
This data product consists of a database of population change and abundance estimates for North American birds, estimated from North American Breeding Bird Survey (BBS) data. Data are presented for 548 species of birds in 4 spreadsheets containing trend estimates and annual indices for 2 time periods. Estimates are derived for each species using the 1 of 4 alternative models, and a cross-validation model selection procedure was used to select the best model for each species.
Categories: Data;
Tags: Bird Annual Indices,
Bird Lists,
Bird Trend Estimates,
Birds,
Breeding Bird Density,
Globally, groundwater dependent ecosystems (GDEs) are increasingly vulnerable to groundwater extraction and land use practices. Groundwater supports these ecosystems by providing inflow, which can maintain water levels, water temperature, and chemistry necessary to sustain the biodiversity that they support. Many aquatic systems receive groundwater as a portion of base flow, and in some systems (e.g., springs, seeps, fens) the connection with groundwater is significant and important to the system’s integrity and persistence. Groundwater management decisions for human use may not consider ecological effects of those actions on GDEs, which rely on groundwater to maintain ecological function. This disconnect between...
Categories: Data;
Types: Downloadable,
GeoTIFF,
Map Service,
Raster;
Tags: Ecology,
Hydrology,
Land Use Change,
New England,
Remote Sensing,
Grouse: These data on sharp-tailed grouse survival times are provided for individuals wanting to run an age-period survival analysis. Entry and exit times are expressed in integer days from the start of the study. Entry age and exit age expressed in integer days are also included. Data are structured to implement survival analysis. White-tailed Deer: These data on white-tailed deer survival times are provided for individuals wanting to run an age-period survival analysis. Entry and exit times are expressed in integer weeks from the start of the study. Entry age and exit age expressed in integer weeks are also included. Data are structured to implement survival analysis. Only adult female individuals that were chronic-wasting...
Categories: Data;
Tags: USGS Science Data Catalog (SDC),
Wildlife Biology,
Wisconsin,
utilitiesCommunication
Data used to test a video monitoring and computational system for estimating juvenile fish abundance
We developed and tested neural network-based models to recognize and count emigrating juvenile river herring in continuous video. Continuous video was collected from an underwater camera installed at Great Herring Pond in Bourne, Massachusetts (USA) between June and November 2017. Our algorithm extracts video frames to assess presence/absence of fish and count numbers of fish emigrating. We used extracted video frames to assess model performance. Provided datasets include information about extracted frames that were used for model assessment. This data release includes four datasets that were used to test model performance and select the best fitting model. (1) The “Model Evaluation Dataset” includes count and presence/absence...
Categories: Data;
Tags: Ecology,
New England, Massachusetts, Cape Cod,
USGS Science Data Catalog (SDC),
biota
Data presented are results of surveys in 2021 for San Diego Cactus Wren (Campylorhynchus brunneicapillus) in southern San Diego County. Surveys were conducted at 378 plots. Plots were surveyed twice in 2021 and the number, age (adult or juvenile), banding status (color banded or not), and breeding status (paired, unpaired, or unknown) of all wrens recorded. Habitat covariate data were collected including amount of dead and stressed cactus in the plot, percent cover of bare ground, and the dominant and percent cover of invasive species.
Categories: Data;
Types: Downloadable,
Map Service,
OGC WFS Layer,
OGC WMS Layer,
Shapefile;
Tags: California,
San Diego,
animal and plant census,
biota,
birds,
This dataset describes mesopredator locations (raccoons and striped skunks), dabbling duck nest locations (mallard, gadwall, and cinnamon teal), northern harrier nest locations, and random locations in relation to a set of habitat features in Suisun Marsh, California during 2016 through 2019. We designed a series of questions to link fine-scale predator movements and vulnerability of dabbling duck nests to predator encounters and egg predation. We conducted our study over a 4-year period using 41 GPS-collared raccoons and striped skunks, two of the most widespread mammalian predators of waterfowl eggs in North America, and more than 2000 monitored duck nests. Each night of movement for mesopredators contains the...
Categories: Data;
Tags: California,
Suisun Marsh,
USGS Science Data Catalog (SDC),
Wildlife Biology,
animal behavior,
The Hawaii Forest Bird Survey (HFBS) systematically characterized plant and bird communities across transects spanning all major Hawaiian Islands except O‘ahu. This extensive dataset has now been organized into a database and associated geographic information system (GIS) layers. This baseline provides an opportunity to assess how forest ecosystems and their constituent bird and plant populations have changed over time. As part of the HaBiTATS (Hawaiian Biodiversity Trends Across Time and Space) project, a select area on Hawai‘i Island was surveyed in 2015 with the objective of demonstrating the potential of using the HFBS methodology to reassess the status of bird and plant communities across multiple geographic...
The Hawaii Forest Bird Survey (HFBS) systematically characterized plant and bird communities across transects spanning all major Hawaiian Islands except O‘ahu. This extensive dataset has now been organized into a database and associated geographic information system (GIS) layers. This baseline provides an opportunity to assess how forest ecosystems and their constituent bird and plant populations have changed over time. As part of the HaBiTATS (Hawaiian Biodiversity Trends Across Time and Space) project, a select area on Hawai‘i Island was surveyed in 2015 with the objective of demonstrating the potential of using the HFBS methodology to reassess the status of bird and plant communities across multiple geographic...
In Hawai‘i and other oceanic islands with few native land mammals, black rats (Rattus rattus) are among the most damaging invasive vertebrate species to native forest bird populations and habitats, due to their arboreal behavior and generalist foraging habitats and habitat use. This is a selected data set used to assess the impacts of rodenticide treatment on black rat (Rattus rattus) abundance within Hawaii Volcanoes National Park (HAVO). The key objective was to identify rat abundance before and after rodenticide treatment, using paired non-treatment and treatment plots at high elevation (1700-1830m) and low elevation (1220-1340 m). This dataset includes the results of a mark recapture study that took place within...
Categories: Data;
Types: Map Service,
OGC WFS Layer,
OGC WMS Layer,
OGC WMS Service;
Tags: BACI,
Hawaii,
Hawaii County 2,
Hawaii Volcanoes National Park,
Hawaii Volcanoes National Park,
These data address experimental evaluations of dietary preference by captive brown treesnakes on Guam. Snakes were collected from the wild in areas with birds present and in areas without birds present 2018–2019. Snakes were then run through preference trials during which they were offered first live lures (mouse and finch) in snake traps on opposite sides of the arena. On the second night, snakes were offered dead carrion (baits) of each prey type (mouse, chicken chick) equal to 30% of their mass. Choices were monitored overnight using game cameras and then transcribed the following day. Individuals were classified as BIRD or NOBIRD snakes based on whether they had birds in their gut contents at the time of capture....
Categories: Data;
Tags: Ecology,
Guam,
Guam National Wildlife Refuge,
Preference,
USGS Science Data Catalog (SDC),
This data release includes data and metadata on 1) the coverage and composition of plants 2) species specific plant traits 3) sampling locations and 4) environmental data. All sites were within Hawaii Volcanoes National Park on Hawaii Island. Plant cover data were obtained from National Park Service Inventory and Monitoring Program. Plant trait data was collected for these plots in 2014. This study aims to evaluate how traits of native and exotic plant species change along environmental gradients and what this suggests for plant competition and invasion.
Categories: Data;
Tags: Ecology,
Hawaii,
Hawaii Volcanoes National Park,
USGS Science Data Catalog (SDC),
botany,
These data include Ceratocystis culture viability results from ambrosia beetle (Coleopetera: Scolytinae) frass. Frass is defined as fine particles of macerated wood or boring dust, beetle parts, and feces. Frass was collected from individual ambrosia beetle galleries in Ceratocystis-infected ʻōhiʻa (Metrosideros polymorpha) trees on Hawaiʻi Island, a phenomenon referred to as Rapid ʻŌhiʻa Death (ROD). We recorded the height at which these beetles produced frass, how long we collected frass from galleries, and the total number of culturing tests from individual galleries.
This data release includes metadata and tabular data that documents initial water conditions (temperature, pH, dissolved oxygen and salinity) during aquarium trials testing the efficacy of carbon dioxide (CO2) to manage invasive fish in anchialine pools.
This data release documents specificity of quantitative polymerase chain reaction (qPCR) assays to detect environmental DNA (eDNA) from tilapia, western mosquito fish and guppies. These assays provide new tools for resource managers to monitor effectiveness of management efforts to remove invasive fish from anchialine pools in Hawaii and to also survey pools for presence and absence of invasive fish. The lab work was conducted during 2019-2022.
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