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Collections of fishes used for data analyses in the project:Historic and Current Habitat Use by Arkansas River Shiner in the South Canadian River in Central Oklahoma as Affected by River Flow: Predictions for Habitat Under Future Climate Scenarios”. Edie Marsh-Matthews and William J. Matthews. Funded and published by the Great Plains Landscape Conservation Cooperative.Collections were all made by seines of a variety of sizes and mesh widths (details for collections are in the appropriate section of the report). Fishes collected were either identified in the field and released or preserved in the field and returned to the laboratory for identification. Habitat data were recorded for each site at different spatial...
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While habitat selection and population estimates are well documented for spring migrating birds in the central Platte River system, little information or monitoring efforts on the North Platte River exist, particularly for the multiple priority bird species known to be present. Most conservation partners deliver habitat programs in the region with limited information and a lack of a landscape prioritization tools. In order for conservation delivery to be more effective and efficient in utilizing limited funds, a decision support tool is critical so that priority species habitat needs are being addressed through appropriate restoration/management strategies in the correct geography at multiple scales. We propose...
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Strategic conservation planning for broad, multi-species landscapes benefits from a data-driven approach that emphasizes persistence of all priority species’ populations and utilized landscapes, while simultaneously accounting for human uses. This study presents such an assessment for priority fishes of the Great Plains of the United States. Species distribution models for 28 priority fish species were created and incorporated into a prioritization framework using the open source software Zonation, accounting for species-specific connectivity needs and current fish habitat condition. Multiple additional assessments were then produced that i.) identify distinct species management units based on distance and compositional...
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The Red River Stakeholder Engagement project’s primary objective was to uncover areas of concern for stakeholders who live, work, and play along the Red River Basin. It examined the complexity of the cultural-geographic landscape across the Red River Basin. By focusing on both the geographic and the cultural, we gain a better understanding of how individuals, communities, and organizations interact with the basin and with one another, how they arecurrently experiencing changes, and what they perceive a changing climate means for them.This cultural-geographic approach recognizes that stakeholders’ concerns, priorities, and actions likely vary across space-and also vary in their cultural significance. For example,...
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This collection contains the report log files produced by the R Package “AKaerial” when the QC data were created from the raw transcribed data. The QC log files document the quality control process, data standards, and what changes (if any) were made to the QC data compared to the raw data. Each log file was named following the same file naming conventions: SSSYYYY_QCLog_OOOO, where; YKD=Duck data, YKG=Goose data, YYY=Year, and OOO=observer’s first initial and last name.
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R code that takes in the nest capture history data (chdata.csv), reformats it for model fitting in the Bayesian MCMC software JAGS via the R package jagsUI. Various generalized linear mixed models are fit using a Huggins two occasion capture history model structure as in Program Mark. A series of models of increasing complexity are fit and compared using DIC. Model text is written to text files for each model but is generally not used or saved. Posteriors are saved as Rworkspaces or written to text files for use in population estimation (nostpop.R). Code can be run to generate model results and R workspaces/objects to inspect parameter estimates. The primary purpose of this code is to compare various mixed model...
Categories: Data, Software; Types: Map Service, OGC WFS Layer, OGC WMS Layer, OGC WMS Service; Tags: ANIMALS/VERTEBRATES, ANIMALS/VERTEBRATES, ANIMALS/VERTEBRATES, BIOLOGICAL CLASSIFICATION, BIOLOGICAL CLASSIFICATION, All tags...
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This multi-layer GeoPackage contains the Alaska Arctic Coastal Plain Aerial Breeding Pair Survey design transects from 2007 to present. The original transects were created as shapefiles and imported to this SQLite database. Transects were saved as individual polylines named according to the year they were created (e.g., “main.ACP_2007_Trans,” “main.ACP_2008_Trans,” “main.ACP_2009_Trans,” etc.). These aerial transects were developed systematically from randomly-selected start points and created along constant lines of latitude. The inter-transect spacing in the low, medium, high, and very-high density strata varies so that areas with higher waterfowl density are surveyed more intensively. The current four-year rotating...
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The Arkansas River Shiner (ARS), Notropis girardi, is a federally threatened minnow that now occurs natively in modest numbers only in the South Canadian River, following decades of range contraction and population losses. The remaining populations are at increasing risk as global change is expected to impact the upper and middle South Canadian River with a rise in temperature as much as 4-6 F and a decrease in precipitation from 10 to 35 % in this century. The primary objective of this project was to evaluate potential effects of habitat and environmental change on Arkansas River shiners by examination of habitat use and availability at several spatial scales using both historical and recently-collected data from...
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We used comparative landscape genetics to examine the relative roles of historical events, intrinsic traits and landscape factors in determining the distribution of genetic diversity of river fishes across the North American Great Plains. Spatial patterns of diversity were overlaid on a patch-based graphical model and then compared within and among three species that co-occurred across five Great Plains watersheds. Species differing in reproductive strategy (benthic vs. pelagic-spawning) were hypothesized to have different patterns of genetic diversity, but the overriding factor shaping contemporary patterns of diversity was the signature of past climates and geological history. Allelic diversity was significantly...
Categories: Data, Publication; Types: Citation, Map Service, OGC WFS Layer, OGC WMS Layer, OGC WMS Service; Tags: CATFISHES/MINNOWS, Colorado, Colorado, FISH, Federal resource managers, All tags...
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On a global scale biodiversity within river networks is threatened by interactions between habitat fragmentation and altered hydrologic regimes. In the Great Plains of North America, stream networks are fragmented by >19,000 anthropogenic barriers and flow regimes are altered by surface water retention and groundwater extraction. We documented the distribution of anthropogenic barriers and dry stream segments in five basins covering the central Great Plains to assess effects of broad-scale environmental change on stream fish community structure, distribution of reproductive guilds, and genetic integrity of select populations. We used an information-theoretic approach to rank competing models involving fragmentation,...
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This data is the Missouri River Basin subset of the National Anthropogenic Barrier Dataset (NABD) 2012 developed by USGS additional gauge data may exist in this dataset. Please refer to the complete dataset for use in other projects. A copy can be found at:https://www.sciencebase.gov/catalog/item/56a7f9dce4b0b28f1184dabdThe follow is metadata from the source data:The main objective of this project was to develop a dataset of large, anthropogenic barriers that are spatially linked to the National Hydrography Dataset Plus Version 1 (NHDPlusV1) for the conterminous U.S. and the high resolution National Hydrography Dataset (NHD) for Alaska (1:63,000 scale) and Hawaii (1:24,000 scale) to facilitate GIS analyses based...
Categories: Data; Types: Downloadable, Map Service, OGC WFS Layer, OGC WMS Layer, OGC WMS Service, Shapefile; Tags: ANTHROPOGENIC/HUMAN INFLUENCED ECOSYSTEMS, Climate Change, Climate Change, Colorado, Colorado, All tags...
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Intrafragment ecology is little studied for imperiled riverine fishes although river fragmentation and habitat loss increasingly threaten sensitive species. A long-term population-monitoring program in the Pecos River, New Mexico, provided detailed data for 15 annual cohorts of speckled chub (Macrhybopsis aestivalis), which were used to assess intrafragment patterns in recruitment and year-class strength in relation to distributional patterns, flow-regime characteristics, and air temperature. Cohorts avoided a degraded upstream reach. Age-1 and older individuals had distributions consistently centered within a central, relict-ecosystem reach that contained high-quality habitat. Age-0 individuals were widespread...
Categories: Data, Publication; Types: Citation, Map Service, OGC WFS Layer, OGC WMS Layer, OGC WMS Service; Tags: Arkansas River shiner (Notropis girardi), Arkansas River shiner (Notropis girardi), CATFISHES/MINNOWS, Climate Change, Climate Change, All tags...
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This multi-layer GeoPackage contains the YKD Coastal Zone Survey design transects from 1985 to present. The original transects were imported to this SQLite database structure and saved as individual polylines named according to the year they were created (e.g., “main.YK_1985_Trans,” “main.YK_1986_Trans,” “main.YK_1987_Trans,” etc.). The aerial transects were developed systematically from randomly-selected start points and created along constant lines of latitude. The inter-transect spacing in the low, medium, high, and very-high density strata varies so that areas with higher waterfowl density are surveyed more intensively. Though the overall study area never changed, the YKD Survey design was modified several times,...
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This R code (eggs.R) inputs the quality controlled nest card data and (1) performs additional quality control on the egg code data, (2) reformat the eggs data into a tidy file of egg observations, (3) summarizes egg data into yearly means of initiation and hatch date based on incubation model, and (4) writes csv files for tidy egg data (eggs.csv) and yearly nest stats (yearstats.csv).
Categories: Data, Software; Types: Map Service, OGC WFS Layer, OGC WMS Layer, OGC WMS Service; Tags: ANIMALS/VERTEBRATES, ANIMALS/VERTEBRATES, ANIMALS/VERTEBRATES, ANIMALS/VERTEBRATES, ANIMALS/VERTEBRATES, All tags...
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This data set provides the coordinates of plot centers, the area of each plot, plot type, and search history of the plot. Plots in this data set are linked through the combination of plot number and year provided in this file. Plot search history indicates if a plot was searched for nests. Plot shape and area has varied through time. After 1985, plot were selected by stratified random sampling, and after 1998 by simple random sampling from the area defined in ‘YKD Nest Plot Study Area Boundary.’ Plot shape has also varied but after 1998 was generally 1/4 by 1/2 mile.
Categories: Data; Types: Map Service, OGC WFS Layer, OGC WMS Layer, OGC WMS Service; Tags: ANIMALS/VERTEBRATES, ANIMALS/VERTEBRATES, ANIMALS/VERTEBRATES, ANIMALS/VERTEBRATES, ANIMALS/VERTEBRATES, All tags...
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In 2019 a pilot study was conducted to determine the feasibility of using distance sampling to estimate density and population size of goose and eider nests on the Yukon-Kuskokwim Delta (YKD). Distance sampling (Buckland et al. 2001) is a common and well-understood method to estimate wildlife population size or density, especially for sparse and hard-to-detect populations. A main advantage of distance sampling is that it accounts for imperfect detection and gives precise estimates for a given level of effort relative to other methods. The objectives for the pilot project in 2019 was to (1) determine if distance sampling is feasible on the YKD, (2) determine what aspects of the field protocol need to be changed or...
map background search result map search result map Historic and Current Habitat Use by Arkansas River Shiner in the South Canadian River in Central Oklahoma as Affected by River Flow: Predictions for Habitat Under Future Climate Scenarios Sandhill Cranes and Waterfowl of the North Platte River Valley: Evaluation of Habitat Selection to Guide Conservation Delivery Final Report: Conservation Priorities for Great Plains Fish Communities Based on Riverscape Connectivity and Genetic Integrity of Populations Species Data Collections: Minnow species collections for the South Canadian River in Central Oklahoma Stream Barriers for the Missouri River Basin Final Report: Red River Stakeholder Discovery Project Summary: Mapping and Predicting Groundwater-Mediated Hydrologic Connectivity for Great Plains Prairie Rivers and Streams Publication: Intrafragment riverscape conservation for an imperiled, small-bodied, pelagic-broadcast spawning minnow: speckled chub (Macrhybopsis aestivalis) Project Summary: Population Management of Prairie-River Minnows Publication: Comparative riverscape genetics reveals reservoirs of genetic diversity for conservation and restoration of Great Plains fishes Final Report: Conservation assessment and mapping products for GPLCC priority fish taxa Alaska Arctic Coastal Plain Aerial Breeding Pair Survey Design Transect Geodata Alaska Yukon Delta Nest Distance Sampling Pilot Project Alaska Yukon Delta Nest Plot Survey Detection Model Fitting Code Using R and JAGS Alaska Yukon Delta Nest Plot Survey Legacy Nest Card Data 1985 - 2019 Alaska Yukon Delta Plot Location, Size, and Search Historic Data 1985 - 2019 Alaska Yukon Delta Tidy Eggs data R Code Alaska Yukon-Kuskokwim Delta Aerial Survey Design Transects Alaska Yukon-Kuskokwim Delta Aerial Survey Analysis File Summary Reports Alaska Yukon Delta Nest Distance Sampling Pilot Project Sandhill Cranes and Waterfowl of the North Platte River Valley: Evaluation of Habitat Selection to Guide Conservation Delivery Alaska Yukon Delta Nest Plot Survey Detection Model Fitting Code Using R and JAGS Alaska Yukon Delta Nest Plot Survey Legacy Nest Card Data 1985 - 2019 Alaska Yukon Delta Plot Location, Size, and Search Historic Data 1985 - 2019 Alaska Yukon Delta Tidy Eggs data R Code Project Summary: Mapping and Predicting Groundwater-Mediated Hydrologic Connectivity for Great Plains Prairie Rivers and Streams Alaska Yukon-Kuskokwim Delta Aerial Survey Design Transects Alaska Yukon-Kuskokwim Delta Aerial Survey Analysis File Summary Reports Project Summary: Population Management of Prairie-River Minnows Publication: Intrafragment riverscape conservation for an imperiled, small-bodied, pelagic-broadcast spawning minnow: speckled chub (Macrhybopsis aestivalis) Historic and Current Habitat Use by Arkansas River Shiner in the South Canadian River in Central Oklahoma as Affected by River Flow: Predictions for Habitat Under Future Climate Scenarios Species Data Collections: Minnow species collections for the South Canadian River in Central Oklahoma Alaska Arctic Coastal Plain Aerial Breeding Pair Survey Design Transect Geodata Final Report: Red River Stakeholder Discovery Final Report: Conservation Priorities for Great Plains Fish Communities Based on Riverscape Connectivity and Genetic Integrity of Populations Publication: Comparative riverscape genetics reveals reservoirs of genetic diversity for conservation and restoration of Great Plains fishes Final Report: Conservation assessment and mapping products for GPLCC priority fish taxa Stream Barriers for the Missouri River Basin