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The U.S. Geological Survey, Western Ecological Research Center (USGS-WERC) was requested by the Bureau of Ocean Energy Management (BOEM) to create a database for marine birds of the California Current System (CCS) that would allow quantification and species ranking regarding vulnerability to offshore wind energy infrastructure (OWEI). This was needed so that resource managers could evaluate potential impacts associated with siting and construction of OWEI within the California Current System section of the Pacific Offshore Continental Shelf, including California, Oregon, and Washington. Along with its accompanying Open File Report (OFR), this comprehensive database can be used (and modified or updated) to quantify...
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This dataset was used to summarize and analyze the mortality factors recorderd on dead trees in the Sierra Nevada Forest Dynamics Plot Network, which is managed by the Sequoia and Kings Canyon Field station of the U.S. Geological Survey's Western Ecological Research Center. Each row of the dataset represents an individual dead tree. These are dead trees that were recorded in the network from 1998 to 2010 for the subset of plots as described in the associated manuscript; These data support the following: Das, A.J., Stephenson, N.L., Davis, K.P. 2016. Why do trees die? Characterizing the drivers of background tree mortality. Ecology. 97(10): 2616-2627, https://doi.org/10.1002/ecy.1497
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These data represent trapping effort and captures of deer mice at Point Reyes National Seashore, Marin County, California. Deer mice were captured and marked with ear tags to allow identification of individuals. The location of captures can be used in a spatially explicit capture recapture model to estimate density of mice and how mouse density varies by site and habitat type.
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To understand the genetic structure of six rare plant species (Acanthomintha ilicifolia, Baccharis vanessae, Chloropyron maritimum ssp. maritimus, Deinandra conjugens, Dicranostegia orcuttiana, Monardella viminea), we obtained samples from known occurrences in San Diego County, prepared and sequenced ddRAD genomic libraries, and developed and analyzed a panel of genetic markers to assess population diversity and divergence. We provide this SNP genotype dataset in Structure format, produced in Stacks v2.0b8, for future monitoring efforts and population genetic analysis. These data support the following publication: Milano, E.R., and Vandergast, A.G., 2018, Population genomic surveys for six rare plant species in...
Observations (reduced to detected/not detected) of 45 vertebrate species (seven mammals, seven amphibians, and 31 reptiles) across Southern California pitfall sampling projects conducted between 1995 through 2015. Habitat patch locations of every pitfall sampling project presented in a shapefile. Habitat patches were measured based on the size when pitfall sampling began within each. Sampling projects within the same geographic area may have different sized patches based on date of project sampling and if patch erosion occurred. A matrix of whether each species was expected within each habitat patch's species pool based on range maps and published records is also included. These data support the following publication:...
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This dataset contains data pertaining to ground surface cover in 30 meter plots around a random selection of points within chaparral from Santa Barbara county south to San Diego County in southern California, USA. These data were obtained from historical aerial imagery from 1943 to 1959 and current imagery from 2016 to 2018 and they were compared to quantify changes in cover type over time. These data support the following publication: Syphard, A.D., Brennan, T.J., Rustigian‐Romsos, H. and Keeley, J.E., 2022. Fire‐driven vegetation type conversion in southern California. Ecological Applications, p.e2626. https://doi.org/10.1002/eap.2626.
These datasets were developed to represent the genetic diversity, population structure, and geographic distribution of Plantago ovata in the Mojave Desert. This data release consists of two tab-delimited text files representing the genetic diversity and structure of Plantago ovata (.genepop and .vcf), and two raster spatial datasets (GeoTIFF) reflecting predicted habitat for the species within the Mojave Desert. The genetic datasets record genetic variation at an individual level, with the file structures varying based on the programs within which the files are intended to be edited. Each file contains 13,111 SNPs genotyped in 748 individuals. The genepop file can be viewed in GENEPOP software (Rousset 2008) or...
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Fragmentation and loss of natural habitat have important consequences for wild populations and can negatively affect long-term viability and resilience to environmental change. Salt marsh obligate species, such as those that occupy the San Francisco Bay Estuary in western North America, occupy already impaired habitats as result of human development and modifications and are highly susceptible to increased habitat loss and fragmentation due to global climate change. We examined the genetic variation of the California Ridgway’s rail ( Rallus obsoletus obsoletus), a state and federally endangered species that occurs within the fragmented salt marsh of the San Francisco Bay Estuary. We genotyped 107 rails across 11...
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This dataset contains data pertaining to ground surface cover in a 30 meter radius around a random selection of points within San Diego County, California. These data were obtained from aerial imagery for the years 1953 and 2016 and were used to assess changes in cover type over time. These data support the following publication: Syphard, A.D., Brennan, T.J. and Keeley, J.E., 2019. Extent and drivers of vegetation type conversion in Southern California chaparral. Ecosphere, 10(7), p.e02796.
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This release consists of data collected from 26 plots in two national parks over a 19-year period. The data consists of plot-level seed counts for three genera, number of seed traps, live tree basal area, plot area, and climate metrics from the gridmet gridded data set, the daymet gridded data set, the PRISM gridded data set, and two nearby COOP stations.
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The spatial data results of USGS surveys for Least Bell's Vireo (Vireo bellii pusillus, LBVI) along the Tijuana River and San Diego River in 2020 to determine abundance and distribution of vireos to facilitate population trend analyses and collect information on dispersal and site fidelity of banded vireos as part of long-term demographic studies at multiple sites.
We assessed the impacts of co-occurring invasive plant species on fire regimes and postfire native communities in the Mojave Desert, western USA by analyzing the distribution and co-occurrence patterns of three invasive annual grasses known to alter fuel conditions and community structure: Red Brome (Bromus rubens), Cheatgrass (Bromus tectorum), and Mediterranean grass (Schismus spp.: Schismus arabicus and Schismus barbatus), and an invasive forb, red stemmed filaree (Erodium cicutarium) which can dominate postfire sites. We developed species distribution models (SDMs) for each of the four taxa and analyzed field plot data to assess the relationship between invasives and fire frequency, years postfire, and the impacts...
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We surveyed for Least Bell’s Vireos (Vireo bellii pusillus; vireo) and Southwestern Willow Flycatchers (Empidonax traillii extimus; flycatcher) along the San Luis Rey River, between College Boulevard in Oceanside and Interstate 15 in Fallbrook, California (middle San Luis Rey River), in 2021. Surveys were conducted from April 13 to July 14 (vireo) and from May 18 to July 13 (flycatcher). We found 180 vireo territories, at least 125 of which were occupied by pairs. The vireo population size decreased by 6 percent from 2020 to 2021. One resident flycatcher, of undetermined breeding status, was observed in the survey area in 2021. He was detected from May 20 to June 4, 2021, and no evidence of pairing or nesting was...
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These products were developed to provide scientific and correspondingly spatially explicit information regarding the distribution and abundance of conifers (namely, singleleaf pinyon (Pinus monophylla), Utah juniper (Juniperus osteosperma), and western juniper (Juniperus occidentalis)) in Nevada and portions of northeastern California. Encroachment of these trees into sagebrush ecosystems of the Great Basin can present a threat to populations of greater sage-grouse (Centrocercus urophasianus). These data provide land managers and other interested parties with a high-resolution representation of conifers across the range of sage-grouse habitat in Nevada and northeastern California that can be used for a variety of...
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Hourly wave-height observations at 32 sites throughout the Channel Islands National Park and San Nicolas Island, site-specific hind casts from the Coastal Data Information Program (CDIP), and contemporary wave height, period, and direction from regional buoys taken during intervals between 2013 and 2017.
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These products were developed to provide scientific and correspondingly spatially explicit information regarding the distribution and abundance of conifers (namely, singleleaf pinyon (Pinus monophylla), Utah juniper (Juniperus osteosperma), and western juniper (Juniperus occidentalis)) in Nevada and portions of northeastern California. Encroachment of these trees into sagebrush ecosystems of the Great Basin can present a threat to populations of greater sage-grouse (Centrocercus urophasianus). These data provide land managers and other interested parties with a high-resolution representation of conifers within the geographic range of the Bi-State Distinct Population Segment of greater sage-grouse that can be used...
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Data presented are results of surveys for California gnatcatchers and vegetation sampling conducted in 2015, 2016, and 2020 to address two inter-related questions: (1) How have gnatcatchers and their habitat recovered in areas burned by wildfires in 2003, 2007, and 2014?, and (2) What is the current regional occupancy of gnatcatchers throughout their southern California range? Data for the post-fire study were collected in 2015, 2016, and 2020, while the regional occupancy survey was conducted in 2016, and 2020. In 2015, gnatcatcher occupancy as a function of fire history was derived from 324 points in the following fire categories: 2003-2006 (106 points), 2007-2010 (111 points), and 2011-2014 (107 points). In 2016,...
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Eggshell thickness was measured at the egg equator and poles (sharp pole and blunt pole) for 12 avian species. Eggshell thickness was related to egg morphometrics (egg length and width), embryonic development, egg status, and mercury contamination. Individual eggshells each have up to 3 thickness measurements, linked by the eggshell identification. Each measurement has the corresponding egg length, egg width, egg status, mercury concentration, and nest identification. Additionally, eggshell thickness was measured at 5 equally spaced positions along the longitude of the egg (sharp pole, quarter egg, half egg, three quarter egg, and blunt pole) in a subset of Forster's tern (Sterna forsteri) eggs. These data support...
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Successful adaptive management hinges largely upon integrating new and improved sources of information as they become available. Updating management tools for greater sage-grouse (Centrocercus urophasianus, hereafter referred to as “sage-grouse”) populations, which are indicators for the large-scale health of sagebrush (Artemisia spp.) ecosystems in the Great Basin of North America, provide a timely example for this tenet. Recently developed spatially-explicit habitat maps derived from empirical data played a key role in the conservation of this species facing listing under the Endangered Species Act. Herein, this report provides an updated process for mapping relative habitat suitability and management categories...
These data represent occupancy surveys conducted in long-term monitoring sites in Yosemite National Park in 2018 for three anurans, the Yosemite Toad (Anaxyrus canorus), the Sierran Treefrog (Pseudacris sierra), and the Sierra Nevada Yellow-legged Frog (Rana sierrae). The data include independent double-observer surveys and time-to-detection data to calculate detection probabilities and account for false negatives, or the failure to detect a species at a site where it occurs. These data support the following publication: Schimel, D.S., 2018, Editorial: Ecological Applications, v. 28, no. 4, p. 869–870, https://doi.org/10.1002/eap.1735.
map background search result map search result map Mortality factors for dead trees from a subset of plots from the Sierra Nevada Forest Dynamics Plot Network from 1998 to 2010 A Century of Landscape Disturbance and Urbanization of the San Francisco Bay Region affects the Present-day Genetic Diversity of the California Ridgway’s Rail (Rallus obsoletus obsoletus) Spatially Explicit Modeling of Annual and Seasonal Habitat for Greater Sage-Grouse (Centrocercus urophasianus) in Nevada and Northeastern California - an Updated Decision-Support Tool for Management Data for calculating population, collision and displacement vulnerability among marine birds of the California Current System associated with offshore wind energy infrastructure (ver. 2.0, June 2017) Geospatial Data for Object-Based High-Resolution Classification of Conifers within Greater Sage-Grouse Habitat across Nevada and a Portion of Northeastern California (ver. 2.0, July 2018) Geospatial data for object-based high-resolution classification of conifers within the geographic range of the Bi-State Distinct Population Segment of greater sage-grouse in California and Nevada Hourly wave-height observations from 2013 to 2017 at 32 sites throughout the Channel Islands National Park and San Nicolas Island Genotypes for six rare plant species found in San Diego County in 2016-2017 Vegetation type conversion in chaparral in San Diego County, California, USA between 1953 and 2016 Invasive Plant Cover in the Mojave Desert, 2009 - 2013 (ver. 2.0, April 2021) Seed Source, Not Drought, Determines Patterns of Seed Production in Sierra Nevada Conifers (ver. 2.0, January 2023) Avian Eggshell Thickness for 12 Species in the Western U.S. from 2014 to 2018 Genetic and Habitat Data for Plantago ovata in the Mojave Desert Site and Survey Data for Amphibian Surveys in Yosemite National Park, 2018 Species Observations from Pitfall Trap Arrays, Species Pool Matrices, and Patch Locations in Southern California from 1995-2015 Rangewide Occupancy and Post-Fire Recovery of California Gnatcatchers in Southern California, 2020 Distribution and Breeding Status of Least Bell’s Vireo Along the San Diego and Tijuana Rivers in San Diego County, California (2020) Distribution and Abundance of Least Bell's Vireos (Vireo bellii pusillus) and Southwestern Willow Flycatchers (Empidonax traillii extimus) on the Middle San Luis Rey River, San Diego County, Southern California in 2021 Vegetation Type Conversion in Southern California Between 1943 and 2018 Captures and Trapping Effort for Deer Mice (Peromyscus sonoriensis) at Point Reyes National Seashore, California, USA from 2021 to 2022 Distribution and Abundance of Least Bell's Vireos (Vireo bellii pusillus) and Southwestern Willow Flycatchers (Empidonax traillii extimus) on the Middle San Luis Rey River, San Diego County, Southern California in 2021 Captures and Trapping Effort for Deer Mice (Peromyscus sonoriensis) at Point Reyes National Seashore, California, USA from 2021 to 2022 A Century of Landscape Disturbance and Urbanization of the San Francisco Bay Region affects the Present-day Genetic Diversity of the California Ridgway’s Rail (Rallus obsoletus obsoletus) Site and Survey Data for Amphibian Surveys in Yosemite National Park, 2018 Hourly wave-height observations from 2013 to 2017 at 32 sites throughout the Channel Islands National Park and San Nicolas Island Vegetation type conversion in chaparral in San Diego County, California, USA between 1953 and 2016 Genotypes for six rare plant species found in San Diego County in 2016-2017 Distribution and Breeding Status of Least Bell’s Vireo Along the San Diego and Tijuana Rivers in San Diego County, California (2020) Seed Source, Not Drought, Determines Patterns of Seed Production in Sierra Nevada Conifers (ver. 2.0, January 2023) Mortality factors for dead trees from a subset of plots from the Sierra Nevada Forest Dynamics Plot Network from 1998 to 2010 Rangewide Occupancy and Post-Fire Recovery of California Gnatcatchers in Southern California, 2020 Species Observations from Pitfall Trap Arrays, Species Pool Matrices, and Patch Locations in Southern California from 1995-2015 Geospatial data for object-based high-resolution classification of conifers within the geographic range of the Bi-State Distinct Population Segment of greater sage-grouse in California and Nevada Vegetation Type Conversion in Southern California Between 1943 and 2018 Genetic and Habitat Data for Plantago ovata in the Mojave Desert Invasive Plant Cover in the Mojave Desert, 2009 - 2013 (ver. 2.0, April 2021) Spatially Explicit Modeling of Annual and Seasonal Habitat for Greater Sage-Grouse (Centrocercus urophasianus) in Nevada and Northeastern California - an Updated Decision-Support Tool for Management Geospatial Data for Object-Based High-Resolution Classification of Conifers within Greater Sage-Grouse Habitat across Nevada and a Portion of Northeastern California (ver. 2.0, July 2018) Avian Eggshell Thickness for 12 Species in the Western U.S. from 2014 to 2018 Data for calculating population, collision and displacement vulnerability among marine birds of the California Current System associated with offshore wind energy infrastructure (ver. 2.0, June 2017)