Filters: Tags: Genetic diversity (X) > Types: OGC WFS Layer (X) > partyWithName: Western Ecological Research Center (X)

Filters Date Range Past year (0) Past month (0) Past week (0) Past day (0) Custom range... To   Search Types Map Service (3) OGC WMS Layer (3) OGC WMS Service (3) Contacts U.S. Geological Survey - ScienceBase Ecosystems Amy Vandergast Dustin A Wood Daniel F Shryock Elizabeth R Milano Lesley A DeFalco Tag Types Theme (3) Place (3) USGS Scientific Topic Keyword (3) Harvest Set (3) Tag Schemes None (3) USGS Thesaurus (2) Common geographic areas (2) USGS Thesarus (1) ISO 19115 Topic Category (2) View Results as: JSON ATOM CSV

Genotypes for six rare plant species found in San Diego County in 2016-2017 To understand the genetic structure of six rare plant species (Acanthomintha ilicifolia, Baccharis vanessae, Chloropyron maritimum ssp. maritimus, Deinandra conjugens, Dicranostegia orcuttiana, Monardella viminea), we obtained samples from known occurrences in San Diego County, prepared and sequenced ddRAD genomic libraries, and developed and analyzed a panel of genetic markers to assess population diversity and divergence. We provide this SNP genotype dataset in Structure format, produced in Stacks v2.0b8, for future monitoring efforts and population genetic analysis. These data support the following publication: Milano, E.R., and Vandergast, A.G., 2018, Population genomic surveys for six rare plant species in... Types: Map Service, OGC WFS Layer, OGC WMS Layer, OGC WMS Service; Tags: Botany, Genetics, San Diego, USGS Science Data Catalog (SDC), biological population management, All tags... ddRADseq, endangered species, genetic diversity, plants (organisms), Fewer tags Genetic and Habitat Data for Plantago ovata in the Mojave Desert These datasets were developed to represent the genetic diversity, population structure, and geographic distribution of Plantago ovata in the Mojave Desert. This data release consists of two tab-delimited text files representing the genetic diversity and structure of Plantago ovata (.genepop and .vcf), and two raster spatial datasets (GeoTIFF) reflecting predicted habitat for the species within the Mojave Desert. The genetic datasets record genetic variation at an individual level, with the file structures varying based on the programs within which the files are intended to be edited. Each file contains 13,111 SNPs genotyped in 748 individuals. The genepop file can be viewed in GENEPOP software (Rousset 2008) or... Types: Map Service, OGC WFS Layer, OGC WMS Layer, OGC WMS Service; Tags: Arizona, Botany, California, Genetics, Mojave, All tags... Nevada, USGS Science Data Catalog (SDC), Utah, biogeography, biota, evolution, genetic diversity, habitats, maps and atlases, native plant materials development, native species, species distribution model, Fewer tags Polioptila californica Genotype Data from California, USA and Baja California, Mexico This dataset contains genomic records from 184 California Gnatcatchers (Polioptila californica) collected at 18 sites in southern California (USA), 13 sites in Baja California (Mexico), and 17 sites in Baja California Sur (Mexico). Genomic markers were generated from ddRAD loci (Peterson and others, 2012) and analyzed using the Stacks v2.53 (Catchen and others, 2013) pipeline. The genotypes for all samples are provided in a VCF file with 84,125 independent loci and 7 percent missing data. A companion file is provided with sample names and occurrence designations. These files may be opened and edited in a text editor program, such as Notepad (PC) or BBEdit (Mac). The .vcf file can be loaded into the Stacks population... Types: Map Service, OGC WFS Layer, OGC WMS Layer, OGC WMS Service; Tags: Baja California, Mexico, North America, Southern California, USGS Science Data Catalog (SDC), All tags... Western United States, Wildlife Biology, biota, ddRADseq, endangered species, evolution, genetic diversity, Fewer tags